Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1375 ATGTCGAAGGATGTTGAAGCCGGAGGGTGTGGTGGGTTCAGCGGCAAGGACTACGAAGACCCGCCCCCAGCCCCATTGATCGACGCGCAGGAGTTTGCTCAGTGGTCCTTTTACAGAGCCATTATAGCCGAGTTCGTTGCTACCCTTTTGTTCTTGTATGTTACTGTTCTCACTGTCATTGGCTATAACGTTCAGACCGATGTTAAGAATGGAGGTCACATTTGCGGCGGCGTCGGCATTTTGGGCATCGCCTGGGCCTTCGGTGGCATGATTTTTGTTCTCGTTTACTGCACCGCCGGAATTTCTGGGGGACATATAAATCCGGCAGTGACGTTTGGGCTGTTTTTGGCACGGAAGGTGTCGTTGGTGCGAGCCGTATTGTACATGGCGGCTCAGAGTTTGGGCGCCATTTGTGGCTGTGCGTTGGTGAAAGCTTTCCAGAACGCTCACTACAATGAGTACGGCGGTGGAGCCAATTCGCTGGCCGACGGCTACAGCACCGGCACCGGATTGGCTGCCGAGATCATCGGAACTTTCGTTCTGGTTTACACTGTGTTTTCGGCTACCGACCCCAAGAGAAATGCCAGAGATTCCCATGTCCCTGTTTTGGCGCCACTCCCAATCGGGTTCGCGGTGTTCATGGTTCACTTGGCCACAATTCCGATCACCGGCACAGGCATCAACCCAGCTAGAAGCTTTGGAGCTGCAGTGGTCTTCAACAAATCCAAGCCATGGGATGACCAATGGATCTTTTGGGTTGGACCATTCATTGGTGCTGCCATTGCTGCAATTTATCACCAATTCATATTAAGAGCAGGGGCAGCCAAAGCTCTTGGATCATTTGCAAGCTCCTAA 855 52.51 MSKDVEAGGCGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYNVQTDVKNGGHICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQSLGAICGCALVKAFQNAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWIFWVGPFIGAAIAAIYHQFILRAGAAKALGSFASS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13308805 13310452 - Maker00012994 Lcy1g1375 623287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1375 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Lcy1g1375 284 FunFam Probable aquaporin PIP1-2 24 284 - -
Lcy1g1375 284 MobiDBLite consensus disorder prediction 1 22 - -
Lcy1g1375 284 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1375 284 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1375 284 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1375 284 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Lcy1g1375 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 281 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lcy1g1375 284 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lcy1g1375 284 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1375 284 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1375 284 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1375 284 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1375 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1375 284 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1373 Lcy-Chr1:13300270 Lcy1g1375 Lcy-Chr1:13308805 6.51E-202 dispersed
Lcy1g1375 Lcy-Chr1:13308805 Lcy7g0654 Lcy-Chr7:6003407 1.10E-164 dispersed
Lcy1g1374 Lcy-Chr1:13303493 Lcy1g1375 Lcy-Chr1:13308805 8.71E-191 tandem
Lcy1g1375 Lcy-Chr1:13308805 Lcy1g1376 Lcy-Chr1:13333268 7.32E-183 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1375 K09872 - csv:101216085 536.184