Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1376 ATGGCCAAGGACTCTGAACCCGGAGGCTTCGCCGCCAAGGACTACCACGACCCACCTCCCGCGCCTCTCATCGACGCCGAGGAGTTCACTCAGTGGTCCTTTTACAGAGCCATCATCGCCGAGTTCATCGCCACGCTTCTGTTCTTGTACGTCACCGTTCTCACTGTCATTGGCTACAGCAGCCAGTCCGACGTCAAAAACGGCGGCCAAATCTGCGGCGGCGTCGGCATTCTCGGCATCGCTTGGGCCTTCGGTGGAATGATCTTCGTTCTCGTCTACTGCACCGCTGGAATTTCCGGTGGCCATATCAATCCGGCCGTGACATTTGGGTTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGGGCTGTATTGTACATGGTGGCTCAGTGTCTTGGTGCCATTTGTGGATGTGCGTTGGTCAAATCGTTCCAGAAGGGTCTCTACAATCGCTACGGCGGTGGAGCCAATTCGCTCGCCGACGGTTACAGTACCGGCACCGGCTTAGCCGCTGAGATCATCGGAACCTTCGTTCTTGTCTACACTGTCTTCTCTGCGACAGATCCAAAGAGGAGCGCTAGAGATTCTCACATTCCTGTTCTAGCACCACTTCCAATTGGGTTCGCCGTGTTCATGGTCCACCTGGCCACCATTCCGGTCACCGGCACCGGTATCAACCCAGCTCGAAGCTTTGGTGCTGCGGTGGTCATCAACCGGAGCAAGCCCTGGGATGACCAGTGGATTTTCTGGGTCGGACCCTTCATCGGAGCCGCCATCGCTGCGTTTTATCACCAGTTCATTTTGAGAGCTGGAGCTGTTAAAGCTCTGGGATCGTTCAGGAGTACCCACAGCGTTTGA 855 55.79 MAKDSEPGGFAAKDYHDPPPAPLIDAEEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDVKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYNRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVINRSKPWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13333268 13335157 + Maker00012288 Lcy1g1376 623288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1376 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1376 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Lcy1g1376 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Lcy1g1376 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Lcy1g1376 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lcy1g1376 284 NCBIfam MIP family channel protein 40 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1376 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1376 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1376 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1376 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1376 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1376 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1376 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1376 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1374 Lcy-Chr1:13303493 Lcy1g1376 Lcy-Chr1:13333268 4.51E-193 dispersed
Lcy1g1376 Lcy-Chr1:13333268 Lcy7g0654 Lcy-Chr7:6003407 6.94E-168 dispersed
Lcy1g1376 Lcy-Chr1:13333268 Lcy1g1378 Lcy-Chr1:13350074 6.10E-98 proximal
Lcy1g1375 Lcy-Chr1:13308805 Lcy1g1376 Lcy-Chr1:13333268 7.32E-183 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1376 K09872 - csv:101214884 536.569