Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1378 ATGAGTACTTTTTCCGATTCTTTACCGGAGAACCTTCACCACATTATCTTTTCAACACTCCCTTACTCACGCGCCGTCGTCTTCGACTGCGATCTCTACGGTGCCGACGAGCCATGGCACATTTGGAAACATTTTCAAGGCGTCGACGGCAGAGATCTCTACTTCTTCACTCAACTCAAGAAATCCACCAACAATTCTGGACAGCTATCTGCTCATATCACCCGCAAGATTGGCTCGGCCGGTGGCACTTGGAGCGGCGAGAACTCGGCCACCCCTGTTTTTGCCCATGAAAATGATGATGAAATAATCGGCTATTGCAAGCGCTTCAGGTACGAGAATCCTCAATTACCGGAACATCATGGTGAATGGATTATGCATGAATATAGCTTGCACAAGAATTTGATAAGCAACTGTCCAGATTCGAATTATGTTTTGTTGTGTCGCATGAGGAAGAATGAAAGACCCAAAAGAAAAGCCGAGAAAAGATGTTTCTCTAAGATTGAGTCGATGAAGAATAGAGTCATGACACCTAAGGTTAATGATATTGAGAAAAATGAAAGATGTTTGTCTGAGTCACAACCTATTGAGCAAAGAGTTGTGGCACCTGAGATGATCTACAACAAGCCTTGCGAGCCTGAGATACCCACCAACCAATTTACTAGTGATGTGTCTTGTATGCGTGAGACCATCATCAACCAAGGTACTAATGATGTGTCTTCCATGCATCATACGACAATCGATCAGTGTACCACTGATGTGCCTTGTGTGCTTGAGATGAGTACCACAAACCAAGGTACCAATGATGTGCCTGATGATGTGCCTTATGGGCATGACATGAATAATGATGAGCTCGAGCTTTGGATTTCAGAGATTTCCATTTCGAAGAAATCGAGGCCATTGGAAGTTTTAGCAATCATGGATTCCACTTTACGTCCAAGCATATTTCTCGTTTCTTTTTTGCCTATTTATAATGATCCCCACATCAAACTTTCATCATCATCGTTCTTCACTCACTCTGCAGCTGCTCTGCTACTCCTCTGTTCCAAAGCCGGAGCCATGTCTAAGGATGTTGAAGCCGGAGGCCGTGGCGGGTTTTCAGCCGCCGACTACCTCGACCAGCCTCCGGCTCCGTTGTTCGACGCCGACGACCTTTTGCGGTGGTCGTTTTACAGGGCCGTCATCGCCGAGTTCGTTGCCACGCTTTTGTTTCTGTACGTCGGAGTTCTCACTGTGATAGGTAATCAGAGTCAGTCTTCCGCCGCCCAATGCGGCGGCGTTGGCGTTCTCGGGATTGCTTGGGCGTTCGGCAGCACCATCTTCGTTTCATTGGTCAGAGCTGTACTGTACATAGCGGCTCAGTGTTTAGGAGCCATTTGTGGGTGTGGCCTGGTGAAGTCATTAAAGAAGGCCAACTTCAATGCCTTCGGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCACCCCCGGCGCCGGCCTCGCCGCCGAGATCATCGGCACCTTCGTTCTTGTATACACCGTCTTCTCTGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCACGTTCCTGTTCTGGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTGGCCACCATTCCGGTCACCGGCGCCGGTATCAACCCGGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAAACACAAAGCTTGGGATAACCATGTAATTTCTCTGGTTTCTAAAATAATCCACTTTTGA 1743 48.71 MSTFSDSLPENLHHIIFSTLPYSRAVVFDCDLYGADEPWHIWKHFQGVDGRDLYFFTQLKKSTNNSGQLSAHITRKIGSAGGTWSGENSATPVFAHENDDEIIGYCKRFRYENPQLPEHHGEWIMHEYSLHKNLISNCPDSNYVLLCRMRKNERPKRKAEKRCFSKIESMKNRVMTPKVNDIEKNERCLSESQPIEQRVVAPEMIYNKPCEPEIPTNQFTSDVSCMRETIINQGTNDVSSMHHTTIDQCTTDVPCVLEMSTTNQGTNDVPDDVPYGHDMNNDELELWISEISISKKSRPLEVLAIMDSTLRPSIFLVSFLPIYNDPHIKLSSSSFFTHSAAALLLLCSKAGAMSKDVEAGGRGGFSAADYLDQPPAPLFDADDLLRWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSAAQCGGVGVLGIAWAFGSTIFVSLVRAVLYIAAQCLGAICGCGLVKSLKKANFNAFGGGATELADGFTPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNKHKAWDNHVISLVSKIIHF 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13350074 13353885 + Maker00013317 Lcy1g1378 623290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1378 580 ProSiteProfiles NAC domain profile. 1 152 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g1378 580 Pfam Major intrinsic protein 441 578 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1378 580 Gene3D NAC domain 10 157 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g1378 580 CDD MIP 391 578 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1378 580 Pfam No apical meristem (NAM) protein 19 130 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g1378 580 Gene3D Glycerol uptake facilitator protein. 376 578 IPR023271 -
Lcy1g1378 580 SUPERFAMILY Aquaporin-like 384 574 IPR023271 -
Lcy1g1378 580 SUPERFAMILY NAC domain 21 151 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g1378 580 PRINTS Major intrinsic protein family signature 494 512 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1378 580 PRINTS Major intrinsic protein family signature 530 552 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1378 580 PRINTS Major intrinsic protein family signature 391 410 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1378 580 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 441 578 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2036 Lcy-Chr12:41689579 Lcy1g1378 Lcy-Chr1:13350074 1.00E-110 dispersed
Lcy1g1378 Lcy-Chr1:13350074 Lcy7g0654 Lcy-Chr7:6003407 5.90E-93 dispersed
Lcy5g1726 Lcy-Chr5:39789350 Lcy1g1378 Lcy-Chr1:13350074 6.79E-06 dispersed
Lcy1g1376 Lcy-Chr1:13333268 Lcy1g1378 Lcy-Chr1:13350074 6.10E-98 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19609 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1378 K09872 - csv:101215842 366.696