Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1380 ATGAAGTTTCGTTTTCTTCTTTCTAGTTGTTGTTCTTCTCGATCGCTGGCAGCCATGGATAACAGCCGGCATGGTGAGGGTTTGTTCTTTTCTATGATTTATTATCGAACCCCTTTGACTGGTTTTTTCCGAACTGAAGCAGATAGACAAGACAATGAGGGGTTTCGTGTGTACTCTTACAACGAGCTTAAATCGGCCACCAATGGATTTAGTGCGGCAAATAAGGTTGGAGAGGGCGGATTCGGCACCGTTTACAAGGGTCGGCTTCGGGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTGTTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATTGCTGAATTAACTTCACTTTCTAATATCAGACATGAAAATCTTGTGGAGCTTAAAGGGTTTTATGTTGATGGAAGCCAGAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCATATGCTCTTCAGGGTGTGGGGGAAAATAGAATGATACTTAGTTGGCAAGCCAGAAAGGACATTTTGATTGGAGTAGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGACCCGCATATAGTTCATAGAGATATAAAAGCCAGCAATATACTACTCGACCATAATTTTACACCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGACAGAGAACCTTTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCGGAATATGCTGTGAGCGGCCATTTGACGCGAAAATCAGATGTCTATAGCTTTGGAGTGTTGTTATTGGAGATTGTCAGTGGGAGAGCAACTGTTGATTTTGATTTGGAACGTGGTGAACACCACTTGGTTCAGAAGGTATGGGAACATTACAAGGCGAATGAGCTAGTAAAATTGATAGATCCCATGCTTGACATGGACTTCCGCAAAGAAGAGGCTGTTAGATTTATGAAAATTGGCCTACTCTGTGTGCAAGAAAACACAACGAAACGACCACAAATGTCTCTCACTGTAAGGATGTTGACGAAGGAGACCGACCTTAAAGATCATAAGATTTCACAACCAGGACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAACTTCGTCGACCAGTATTTTTTCCAAGGTTTCCACATCAAATAGCATGTAA 1164 42.1 MKFRFLLSSCCSSRSLAAMDNSRHGEGLFFSMIYYRTPLTGFFRTEADRQDNEGFRVYSYNELKSATNGFSAANKVGEGGFGTVYKGRLRDGRKIAVKVLSVEVESMRGEREFIAELTSLSNIRHENLVELKGFYVDGSQRYLVYDYMENNSLAYALQGVGENRMILSWQARKDILIGVARGLAYLHEEVDPHIVHRDIKASNILLDHNFTPKVADFGLAKLLTENLSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLERGEHHLVQKVWEHYKANELVKLIDPMLDMDFRKEEAVRFMKIGLLCVQENTTKRPQMSLTVRMLTKETDLKDHKISQPGHIIDFMDIKMGKGTSSTSIFSKVSTSNSM 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13367297 13370261 - Maker00012271 Lcy1g1380 623292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1380 387 Gene3D Transferase(Phosphotransferase) domain 1 148 359 - -
Lcy1g1380 387 FunFam Putative LRR receptor-like serine/threonine-protein kinase 148 355 - -
Lcy1g1380 387 Gene3D Phosphorylase Kinase; domain 1 43 147 - -
Lcy1g1380 387 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 42 379 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lcy1g1380 387 ProSiteProfiles Protein kinase domain profile. 70 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1380 387 SMART serkin_6 70 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1380 387 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 44 147 - -
Lcy1g1380 387 Pfam Protein kinase domain 72 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1380 387 CDD STKc_IRAK 76 345 - -
Lcy1g1380 387 SUPERFAMILY Protein kinase-like (PK-like) 54 351 IPR011009 -
Lcy1g1380 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1380 387 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1380 Lcy-Chr1:13367297 Lcy6g0701 Lcy-Chr6:6834561 1.54E-126 dispersed
Lcy1g1380 Lcy-Chr1:13367297 Lcy9g1396 Lcy-Chr9:38975458 2.74E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65665 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1380 - - - 0.0