Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1384 ATGATGTCTGGTATTGAATTTTCTGTTCCTTCTTCTGTTGGTGAGTTTGTTCCTCAACAAAGCTCTCAGCTTTATCATCTTCCACCTCATAACCCTAACCCTAACCCTAATCCAAATCCTGATTCTTCTCTCCCTCCTCCTCTCCCCAAGAAGAAGAGAAATTTGCCGGGAAAACCAGATCCAGATGCTGAGGTTATTGCTTTATCTCCCAACACTCTCATGGCCACAAACAGATTCGTCTGTGAGATATGCAACAAAGGGTTTCAAAGGGACCAAAACTTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTGAGGCAGAGAAGCAACAAAGAGGTGAAGAAGAAGGTTTATATTTGCCCTGAGAAGTCTTGTGTTCACCATGATCCAGCCAGAGCCCTTGGGGACCTGACTGGAATTAAAAAGCACTTCAGTAGAAAGCACGGGGAGAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAGACCTGTGGAACTCGAGAGTACAAGTGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACTCACAGAGCATTCTGCGACGCTCTAGCAGAAGAAAGTGCAAGGCTAATCTCATCAGTCACAGCCGCAAATCCAAAGCCAAATTTCATTGCCAATTCACTCATGATCAACAACGAATCTCTCTTCAATTCCCAACACTTCAATCTTCCCAATTCCCAACCCCGAATCTTTGTCCGACCAGACCATACTAATTTCGACCCCTTCAATAATAACAATTACAATAATCCCAATATTCCGACCGAATCACCGACCATTCCCATCAACACCAATCTCTACGAAATCTCAAACAGAATTCTGGGTTTGAGCAGAAACCCTTCCAAGACGGCCGTCAGCCTCTCTCTCTCCAATAATGCCCAACCACAAGAGCCTGCCTATGAGTCCTCATCATCGATGGTGCCGATGTCGGCGACGGCGCTGCTGCTGAAGGCGGCGCAGTTGGGATCGACGAAGAGCGACCCGTCGTGCTCGGGGAACAGCGTGGGAGTGATGAGTTCGTGTTCGAGTTCGTTCGATCGGAGCAAATTAGGGGAGTTGCAGCGGATGTTTGAGAGTGGCAATGGGAGGAAGGCGGAGCAGGGGAAGGGGTTGAGGGATTTTCTTGGGACGGCGGAGAGAGGAGGGAGTTTGAATGAGAATAATGTGGAGTTGGTTCCATTGATGGGGTTGAGCCAATTCATTGGCGATAATAATATTCGAGGATGA 1293 47.41 MMSGIEFSVPSSVGEFVPQQSSQLYHLPPHNPNPNPNPNPDSSLPPPLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLISSVTAANPKPNFIANSLMINNESLFNSQHFNLPNSQPRIFVRPDHTNFDPFNNNNYNNPNIPTESPTIPINTNLYEISNRILGLSRNPSKTAVSLSLSNNAQPQEPAYESSSSMVPMSATALLLKAAQLGSTKSDPSCSGNSVGVMSSCSSSFDRSKLGELQRMFESGNGRKAEQGKGLRDFLGTAERGGSLNENNVELVPLMGLSQFIGDNNIRG 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13398972 13402017 - Maker00013065 Lcy1g1384 623296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1384 430 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Lcy1g1384 430 MobiDBLite consensus disorder prediction 29 52 - -
Lcy1g1384 430 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 154 178 - -
Lcy1g1384 430 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Lcy1g1384 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 364 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy1g1384 430 Gene3D Classic Zinc Finger 59 131 - -
Lcy1g1384 430 MobiDBLite consensus disorder prediction 18 64 - -
Lcy1g1384 430 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 116 150 - -
Lcy1g1384 430 Gene3D Classic Zinc Finger 133 212 - -
Lcy1g1384 430 FunFam protein indeterminate-domain 12-like 58 126 - -
Lcy1g1384 430 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Lcy1g1384 430 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
Lcy1g1384 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Lcy1g1384 430 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 181 219 - -
Lcy1g1384 430 SMART c2h2final6 155 175 IPR013087 -
Lcy1g1384 430 SMART c2h2final6 79 101 IPR013087 -
Lcy1g1384 430 SMART c2h2final6 120 150 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0146 Lcy-Chr13:1423410 Lcy1g1384 Lcy-Chr1:13398972 5.10E-109 dispersed
Lcy1g0725 Lcy-Chr1:6207818 Lcy1g1384 Lcy-Chr1:13398972 8.96E-108 dispersed
Lcy1g1384 Lcy-Chr1:13398972 Lcy8g1391 Lcy-Chr8:40605432 9.63E-109 dispersed
Lcy11g0296 Lcy-Chr11:4669277 Lcy1g1384 Lcy-Chr1:13398972 2.08E-97 transposed
Lcy1g1384 Lcy-Chr1:13398972 Lcy5g0280 Lcy-Chr5:2632744 1.90E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19610 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1384 K25870 - csv:101221389 425.631