Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1393 ATGTTGGACCTCAATCTCTGTATTCTCTCCCGAGAGTCCGCTTCCGGGTCCGCCGATTTGAGTCCCTTGAAGCTTTCCGGCGCCGGAGTTGAGAGTCCCATTTCTTCCTCCGTCGTCAACGCCGATCATTCCAACACCACCGGCGACGAGGACTCCTCTTCCAACGCCGATTGCGGTTTCACTTTCTCCTTCAGCATCCTCAACAACAACGACGATCAACGCGACCGGGCGGCCCGGTTTCCCCCCGTCGCCGGCGTCTGTTCGCAGAGGAAATGGCTGGATTCTGATTTTGTTAGAGCCAATAACAGAATCGTGGTTCAACAGTCCGTTCATCCGGTGAAGAAGGGCCGGCGAGGTCCCAAATCGAGGAGCTCGCAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTGGGAGGTTTTGACACAGCTCTTTCTGCAGCCAGGGCTTATGATCGAGCTGCAATCAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAACATCAGCGACTACAGTGAAGAGATCAAACAGCTCTGTTTTGGGGCTTCAATGGCGGATTTGCAGATGAGTAACTTTAGTAAAGAAGAATTTGTGCATATTCTTCGAAGGCAGAGCACTGGGTTTTCAAGAGGGAGTTCCAAATACAGAGGAGTTACTCTGCACAAGTGTGGGCGATGGGAGGCTCGAATGGGGCAGTTTTTGGGGAAGAAGGGCCGTGGGCCAATGGGGTTTGGAATGGGTTGGAATGGATTGGGAAGGGATGCCCATGTTTGGTTGGCCATGGTGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATACAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCATATGAGATGGAGATTGCTTTTGAATCTGAAAACCCTGGTATGGGTGATATTGACTTGAACTTGGGCATTGCCCCTCCAGCTTGTCCATCTGAAGAGCAAAGGGACAACCTTAATGGCTGTGCTCCAAATTTCTTTGGCTTCAAAAAATCAGATCATTATTCTGAGAGTTCTGGGGTGATGCTTGAAAACCATGCTTCTGTGGCTGTGAGAGCACACCCTTCTTTTATCAGAACTGCCAATTTCTTTCCTACCTACCAGGAAAGAGCAATGGAGAAGAGAATAGAAGTTGAATCCTTACCGAACTGGGGTTGGCATATCCCAAGCCCCTACGGCGGAGCAACTTCAGCCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCCCCTGCTGTTCCTCCGCCCTCGCCCCACCATCTTCTTCCAGCGGCGCCGCCGTTCCTCCGCTACCGCATCCCGCCCGACATTCCCGCCAGTAACAGCCTACCTCATTTTTACTGCAGGACTTAA 1455 50.1 MLDLNLCILSRESASGSADLSPLKLSGAGVESPISSSVVNADHSNTTGDEDSSSNADCGFTFSFSILNNNDDQRDRAARFPPVAGVCSQRKWLDSDFVRANNRIVVQQSVHPVKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTALSAARAYDRAAIKFRGVHADINFNISDYSEEIKQLCFGASMADLQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKGRGPMGFGMGWNGLGRDAHVWLAMVYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESENPGMGDIDLNLGIAPPACPSEEQRDNLNGCAPNFFGFKKSDHYSESSGVMLENHASVAVRAHPSFIRTANFFPTYQERAMEKRIEVESLPNWGWHIPSPYGGATSAPFFSTAASSGFPSSPAVPPPSPHHLLPAAPPFLRYRIPPDIPASNSLPHFYCRT 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13480982 13486209 - Maker00013283 Lcy1g1393 623305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1393 484 MobiDBLite consensus disorder prediction 29 54 - -
Lcy1g1393 484 FunFam AP2-like ethylene-responsive transcription factor 125 184 - -
Lcy1g1393 484 ProSiteProfiles AP2/ERF domain profile. 229 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 Pfam AP2 domain 126 174 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 SUPERFAMILY DNA-binding domain 273 312 IPR016177 GO:0003677(InterPro)
Lcy1g1393 484 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 65 330 - -
Lcy1g1393 484 CDD AP2 228 313 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677(InterPro)
Lcy1g1393 484 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 Gene3D AP2/ERF domain 228 312 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 MobiDBLite consensus disorder prediction 30 54 - -
Lcy1g1393 484 CDD AP2 125 184 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 ProSiteProfiles AP2/ERF domain profile. 126 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 SMART rav1_2 229 317 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 SMART rav1_2 126 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1393 484 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1393 Lcy-Chr1:13480982 Lcy8g0777 Lcy-Chr8:28496511 4.79E-94 dispersed
Lcy1g1393 Lcy-Chr1:13480982 Lcy5g0256 Lcy-Chr5:2409648 5.82E-121 wgd
Lcy1g1393 Lcy-Chr1:13480982 Lcy8g1865 Lcy-Chr8:44963989 2.82E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19612 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1393 K09284 - csv:101211008 624.78