Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1415 ATGGGGAACGCCCATGGCCACCGAAAGCATTTCAACCATGGCGTAAATATCTCTCGACCCACTAACGCTCATTCTCCCTCCAATAAATACTCTCCATCTGCACCTGCTTCTCAAAGTTCGACCTCGACGGCGAAGATGGAGTCCTTGCCCTACGCCCGCGTTGATTCGAGCCTCCGAGCGCTTGCGGGTCAGGCCGAGGGCTTCGGCCGCTTTTCCATTGGTGGCCTCCATGGTTCTGTTTATTGCGTCACTAATTTGGCAGGTGGAACTGAAGATTTTAAAGTCATTGAGAAGTCCTTAAATCTGTATTTTGTTTTTGTTGTAGATGATGGTCCGGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCCCTCTGGATTGTCTTTGAACTTTCGGGCACAATTAACTTGTCTACATATCTGAGTGTGTCCTCTTATAAGACTGTAGATGGTCGTGGTCAGAGGATAAAAATTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGTAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTCGATGGAATTCAAATTAAACCTAATTCAAAGCATATATGGATAGACCGTTGCAGCCTCCGAGATTATGACGATGGGTTGATCGATATCACCCGGGGAAGCACAGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACAATGCTCATTGGAGCAGATCCCTCTCACATTGGTGACCGATGTATCCGTGTCACTATTCACCACTGTTTTTTCGATGGTACACGTCAACGACATCCACGCGTTAGATACGCTCAAGTACATCTATACAATAATTACACCAGAAATTGGGGGATCTATGCTGTCTGTGCTAGCGTAGAATCACAGATATACTCTCAGTGCAACATATATGAAGCGGGAGAGAAAAAGGTGGCATTTAAATATTTAACTGAAAAGGTAAATTTATTCTTTTCCATTCTCTATGATTTGATTCCACATGCAACAGACAAGGAAGAGCCTTCAAGTGGATGCATATGGTCTGATGGAGATTTATTTGTAAGTTGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGAACATAACTTGTTTCATCCCTCACAACATTACTCTGCTTGGACTGTGGAACCTCCAACAGATTCTCTCAAACATATTCTCCAACATTGTACTGGATGCCAAAACATCCCAAGGCCCACTGATCAGCCACTGGTACCTTAG 1236 44.26 MGNAHGHRKHFNHGVNISRPTNAHSPSNKYSPSAPASQSSTSTAKMESLPYARVDSSLRALAGQAEGFGRFSIGGLHGSVYCVTNLAGGTEDFKVIEKSLNLYFVFVVDDGPGSLRFGCRMKEPLWIVFELSGTINLSTYLSVSSYKTVDGRGQRIKITGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGEKKVAFKYLTEKVNLFFSILYDLIPHATDKEEPSSGCIWSDGDLFVSCTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDQPLVP 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13707615 13711381 + Maker00013021 Lcy1g1415 623327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1415 411 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Lcy1g1415 411 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Lcy1g1415 411 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Lcy1g1415 411 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Lcy1g1415 411 MobiDBLite consensus disorder prediction 1 42 - -
Lcy1g1415 411 SUPERFAMILY Pectin lyase-like 62 405 IPR011050 -
Lcy1g1415 411 ProSiteProfiles Zinc finger integrase-type profile. 358 399 IPR003308 GO:0008270(InterPro)
Lcy1g1415 411 SMART amb_all 132 310 IPR002022 -
Lcy1g1415 411 PANTHER PECTATE LYASE 18-RELATED 57 362 IPR045032 GO:0030570(InterPro)
Lcy1g1415 411 Pfam Pectate lyase 141 303 IPR002022 -
Lcy1g1415 411 Gene3D - 51 388 IPR012334 -
Lcy1g1415 411 MobiDBLite consensus disorder prediction 15 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1415 Lcy-Chr1:13707615 Lcy7g0622 Lcy-Chr7:5671541 3.58E-39 dispersed
Lcy1g1415 Lcy-Chr1:13707615 Lcy10g1725 Lcy-Chr10:41619642 3.74E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1415 K01728 - csv:101219724 687.567