Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1424 ATGAATATCCAAATTAGCCAATGGTGTGTCGCAGGCAAGCCTTTTTTTGCTGTGGTGTTCTTGCAGTTTGGGCTTGCAGGAATGGACATCCTGTCTAAAGCAGCTCTCAATCAAGGAATGAGCAACTATGTTCTTGTTGTTTATCGCCATGCAGTTGCCACAATTGTTATAGCTCCTTTTGCACTGATTTTTGACAAGCCAGTGGTCGATCAGAACTTGTATTTCTTGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCCATGTGCAATATTCTCCCTGCCATAACCTTTGTAATGGCTTGGGTCCTCAGGCTCGAGAAGGTAAAAATCAAAAGCATCAGAAGCCAAGCCAAGTTGGTGGGAACCATAGCAACAGTTGGAGGAGCCATGATAATGACACTGATAAAAGGCCCAATTCTAGAGCTATTTTGGGTGAAAGAGAGAGCAGACCACCAACAACAAAGGGGTGATATCAGCCTTGGACACACAATCAAAGGTTCAATTATGATCACAATCGGCTGTTTCAGCTGGGCCTCCTTCATGATTCTTCAGGCAATCACTTTGAAAGCTTACCCAGCCGAGCTTTCTCTCACGGCTTGGATCTGCCTGCTGGGCACTGCGGAAGGAACTGTGTTGGCTTTGGTTATGGAAAGAGGAAATGCCGCCGTTTGGTCCATTGGTTGGGGAACTAAATTGCTTGCCGCTGTTTATAGTGGGATATTTTGTTCAGGACTTGCTTATTACATTCAAGGAATAGTTATGAAAGACAAAGGACCTGTGTTTGTGACTGCCTTTAGCCCTTTGAGTATGGTCATTGTGGCCATTATGAGTTCCTTCATTTTGGGCGAGCGTCTTTACTTCGGAAGGGTACTTGGAGCTGTTGTGATAATTGTGGGGCTGTACCTTGTTGTTTGGGGCAAAAACAAAGATGGAAATTCCTCAAGTGAAGATTTAAAATTGCCCACCAAACAAACAAGAGAAATAGAAGCCAACAAGATGGAAAGTTTAACAATTGAAGCATCTAATTCTGTTGATGATCTAAAGAATGAGCAAAAATAA 1062 43.22 MNIQISQWCVAGKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKPVVDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWVLRLEKVKIKSIRSQAKLVGTIATVGGAMIMTLIKGPILELFWVKERADHQQQRGDISLGHTIKGSIMITIGCFSWASFMILQAITLKAYPAELSLTAWICLLGTAEGTVLALVMERGNAAVWSIGWGTKLLAAVYSGIFCSGLAYYIQGIVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGRVLGAVVIIVGLYLVVWGKNKDGNSSSEDLKLPTKQTREIEANKMESLTIEASNSVDDLKNEQK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13795372 13799966 - Maker00012539 Lcy1g1424 623336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1424 353 PANTHER WAT1-RELATED PROTEIN 17 320 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy1g1424 353 Pfam EamA-like transporter family 166 305 IPR000620 GO:0016020(InterPro)
Lcy1g1424 353 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 135 - -
Lcy1g1424 353 SUPERFAMILY Multidrug resistance efflux transporter EmrE 214 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1424 Lcy-Chr1:13795372 Lcy7g0868 Lcy-Chr7:8637554 3.07E-137 dispersed
Lcy1g1424 Lcy-Chr1:13795372 Lcy10g1819 Lcy-Chr10:42503278 1.56E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1424 - - - 0.0