Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1432 ATGAGTGTGAATATAACCGCTATCAAAACGGCGTCGGAAGGGGTCTGGCAAGGCGACAACCCATTGGATTTTGCCTTCCCTCTATTAATCGTTCAGTGCATTTTGATCCTCTTCGTCACTCGCTTCCTCGCTTTCCTCCTCAAACCCCTCCGCCAGCCCAAAGTCACCGCTGAGATTCTCGGTGGGATTCTGTTGGGCCCATCCGCTTCTGGTCGAAGCAAGCTGTTTTTGGATCGGATTTTCCCCCCATGGAGCACTCCCATTCTCGAATCCGTCGCCAGCATCGGCCTGCTCTTCTTCCTCTTTCTCGTCGGCCTCGAGCTCGATCTCTCCTCCATTCGCCGCGGCGGAACCAAGGCTTTCGGCATAGCATTCGCCGGCATTTTCGCCACCTTCCTCGGCGGCGTCGGCGTCACCTTCGTCCTCAGAAACACTGTCGACGGTGCCGACGAGGTCGGCTACAGCCAGTTCCTAATCTTCATGGGCGTCGCTCTCTCCATCACCGCCTTCCCCGTTCTGGCTCGCATTCTCGCCGAGCTCAAACTCCTCACCACCCAAGTCGGAGAGACCGCCATGGCTGCTGCTGCCTTCAACGATGTCGCCGCTTGGATCCTCTTGGCCCTCGCTGTGGCCCTCACTGGCGGGGCCGGCGACAACCCCTTGGTATCCGTGTGGGTCCTACTTTCGGGAGTTGGGTTCGTGGTTTTCATGATGGTAGCGATTCGACCGGCGATGAAACGGGTGGCCCGCCGGTTTGCCCCAGAGCAGAAGGCTGCGGAGGAGGAGGCGTACATATGCGTGACATTGGTGGGGGTTTTGATGGCGGGGCTGGCGACGGATTTCATCGGAATCCACTCGATCTTCGGGGGTTTCGTATTCGGGCTGATGGTTCCGAAAGGGGGCAGGTTCGCAGAGAGATTGATGGAGAGAATCGAAGATTTCGTATCGGGTCTTCTTCTCCCTCTGTACTTCGCGTCAAGTGGGTTGAAGACAGACATAGGGAAGATTCATGGGGGAAGGGCTTGGGGGTTGTTGGCGTTGCTGATATCCACCGCATGCGCAGGGAAGATCCTTGCGACGTTTCTGGTGTCCATGGCGTTTCTTATGCCCCCCAGAGACTCCCTCGCCTTGGGCCTTCTTATGAACACCAAAGGCTTGGTCGACCTCATCGTCCTCAACATCGGCAAGGACAAAAAGGTTTTGAACGATGAAGTATTTGCGCTATCGGTACTAATGGCGCTTTTCACTACTTTCATGACCACCCCTTCTTTGATCGCGATTTACAAGCCAGCCAGTGGGGCGTCCAGCGCCACCCACAAAAAAAAACTACGTGAGCGCAAAGTGGAAGAGCTCCGAATCCTGGCCTGCATCCATGGACCTGGAAATCTACCATCCTTAACAAACTTGATCCACTTAACTCGAAGCACCAAACATTCTTCTTCTCTCAAGCTTTTCGCCATGCGCCTAGTCGAGCTCACCGAGCGCTCCTCCTCGATCATCATGGTCCAACGAGCTCGCAAGAACGGATTCCCCTTCTTCACAAGGTTCCGCAGAGGCGAATGGCAGGACCAACTGATCGGAGCCTTTCAATGTCAATCCAACGCCCACCTGGGCCGGCTCAAGGTCCGACCCACCACCACCATCTCTTCCCTCTCAACCATGCATCAAGACATCTGCCACGTGGCAGAGGATAAGAGGGTCTCACTCATCATCCTGCCCTTCCACAATAGTTGGAGTAGCGACGAGGATAAGGATACGGCTCTGACCACGTGGATGAGCCATGGTTGGAGGCAGGTGAACCAGAGGGTGTTGGACAGTGCGCCGTGCTCGGTGGCGGTTATTGTCGATCGTGGACTCGGGGCTAGTGGGGCCCAGCGGATTTGTGTTCTCTTTTTTGGTGGGCCCGACGACCGTGAGGCCCTCGAGTTGGGCCGACGAATGGCGGAGCATCCGACGGTGAAGCTGACGGTGGTCAGGTTCCACATCATGCTCGTGGAGGTTAATAATAAACATGTCGTTTTGGAACCCATGCCTTCAGAATCCTACGCTGATCATGGCCGTGATGGTAATGCAAAACAAAAGCTAGATGACGACTTGGCAATGGTAGAGTTTAGAAGCAAATGTGGCGAATCAGTTGAGTACGTCGAGAGGGAGGCGAACGTCGACGACGAAGACATTGTTGAAGGGGTGGTGGACATCGGACGAGAAGGCGCTTACGACCTAATTGTGGTCGGAAAAGGTCGGTTTCCATCGATCGTGGCGGTGAAACTAGCAGATCATCGAACACAACTCACCGAGCTCGGGCCAATAGGTGACATACTGGTGACCTCCCACGGGGGAGTATTGGCTTCACTACTGGTAGTTCAACAACATTGA 2376 55.13 MSVNITAIKTASEGVWQGDNPLDFAFPLLIVQCILILFVTRFLAFLLKPLRQPKVTAEILGGILLGPSASGRSKLFLDRIFPPWSTPILESVASIGLLFFLFLVGLELDLSSIRRGGTKAFGIAFAGIFATFLGGVGVTFVLRNTVDGADEVGYSQFLIFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALTGGAGDNPLVSVWVLLSGVGFVVFMMVAIRPAMKRVARRFAPEQKAAEEEAYICVTLVGVLMAGLATDFIGIHSIFGGFVFGLMVPKGGRFAERLMERIEDFVSGLLLPLYFASSGLKTDIGKIHGGRAWGLLALLISTACAGKILATFLVSMAFLMPPRDSLALGLLMNTKGLVDLIVLNIGKDKKVLNDEVFALSVLMALFTTFMTTPSLIAIYKPASGASSATHKKKLRERKVEELRILACIHGPGNLPSLTNLIHLTRSTKHSSSLKLFAMRLVELTERSSSIIMVQRARKNGFPFFTRFRRGEWQDQLIGAFQCQSNAHLGRLKVRPTTTISSLSTMHQDICHVAEDKRVSLIILPFHNSWSSDEDKDTALTTWMSHGWRQVNQRVLDSAPCSVAVIVDRGLGASGAQRICVLFFGGPDDREALELGRRMAEHPTVKLTVVRFHIMLVEVNNKHVVLEPMPSESYADHGRDGNAKQKLDDDLAMVEFRSKCGESVEYVEREANVDDEDIVEGVVDIGREGAYDLIVVGKGRFPSIVAVKLADHRTQLTELGPIGDILVTSHGGVLASLLVVQQH 791
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 13865152 13868530 - Maker00013412 Lcy1g1432 623344
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1432 791 Pfam Sodium/hydrogen exchanger family 36 424 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy1g1432 791 CDD USP_Like 626 745 - -
Lcy1g1432 791 FunFam Cation/H(+) antiporter 15 28 434 - -
Lcy1g1432 791 Gene3D - 473 765 - -
Lcy1g1432 791 Gene3D - 28 434 IPR038770 -
Lcy1g1432 791 PANTHER CATION/H + ANTIPORTER 9 791 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1432 Lcy-Chr1:13865152 Lcy1g1455 Lcy-Chr1:14144593 0 dispersed
Lcy1g1431 Lcy-Chr1:13856629 Lcy1g1432 Lcy-Chr1:13865152 4.10E-271 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1432 K26731 - csv:101207589 993.801