Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1434 ATGGCTTCTCTCTCTCTCCTCTGCATTTTCGCCTCTCTCTCCTCCCTCTTCCTCCTCTCCCATGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGAACCATGGGCGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACGGCGGCGCTGAGTACCGCTCTCTTCAACAATGGCTTTAGCTGCGGTGCTTGCTTCGAGATCAAGTGCGCTAATGACCCCAAGTGGTGCCATCCCGGCAGCCCTTCCATTTTCATTACGGCCACCAATTTCTGTCCCCCGAATTTCGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGCACTCATTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGAATCGTCCCCGTCGCTTACCGCCGAGTGGCATGTAGGAAACAAGGGGGGATCAGGTTCACAATCAACGGCTTCCGTTACTTCAACTTGGTTTTAATCACGAATGTGGCGGGTGCAGGGGATATCGTGAGGGTGAGCGTAAAAGGATCGAACACAGCGTGGATGAGTATGAGCCGGAACTGGGGGCAAAATTGGCAATCCAACGCGGTTTTGGTGGGCCAGGCCCTCTCGTTCCGGGTCACGGGCAGTGACCGTCGCACCTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTCTGA 780 57.56 MASLSLLCIFASLSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPKWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTAWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13900248 13901899 + Maker00012399 Lcy1g1434 623346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1434 259 FunFam Expansin 22 161 - -
Lcy1g1434 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Lcy1g1434 259 Gene3D - 165 257 IPR036749 -
Lcy1g1434 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Lcy1g1434 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Lcy1g1434 259 CDD DPBB_EXPA_N 32 160 - -
Lcy1g1434 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Lcy1g1434 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Lcy1g1434 259 PANTHER EXPANSIN-A15 14 257 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 SMART dpbb_1 68 155 IPR007112 -
Lcy1g1434 259 FunFam Expansin 165 257 - -
Lcy1g1434 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Lcy1g1434 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Lcy1g1434 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Lcy1g1434 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Lcy1g1434 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Lcy1g1434 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Lcy1g1434 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Lcy1g1434 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Lcy1g1434 259 Gene3D - 21 161 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1106 Lcy-Chr10:33380233 Lcy1g1434 Lcy-Chr1:13900248 4.86E-78 dispersed
Lcy10g1867 Lcy-Chr10:42862024 Lcy1g1434 Lcy-Chr1:13900248 6.66E-158 dispersed
Lcy11g0175 Lcy-Chr11:1996279 Lcy1g1434 Lcy-Chr1:13900248 3.44E-155 dispersed
Lcy1g1434 Lcy-Chr1:13900248 Lcy7g0893 Lcy-Chr7:8939840 1.07E-168 dispersed
Lcy1g1311 Lcy-Chr1:12580749 Lcy1g1434 Lcy-Chr1:13900248 6.81E-111 transposed
Lcy1g1434 Lcy-Chr1:13900248 Lcy8g1801 Lcy-Chr8:44424220 1.51E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1434 - - - 0.0