Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1439 ATGGCGATCTCTGGGTTTCGAGCTCTTCTATGGTGGAGAAAATGGTCCAAGAAAGACTGGGCGGTTGCAGTCATCTGCTTCGCTTTCATTGTTTTCGTTCTCTCTTTCCTCTCCGACTCTTGGCATGCTGAAGACGCTGGCATCGATCACACTTTCGATCTCAATCCCGCCAATGACCCCGATTTGGTTGACCTATCCTTGCTGCAGAATGCCAAAGCAAAAGGCGCTTTATGTCTTGATGGGAGCTTGCCTGGATACCATTTTCAGAAAGGGTTTGGATCTGGTTCTGGCAACTGGGTGCTTCACATTGAGGGTGGAGGTTGGTGCGATACAGTCTCGTCCTGTTCTTTGCGTAAAATGACCCCGTTAGGTTCATCAGACTACATGGATCGTCGTGTTCGTTTTTCTGGAATTTTAAGTAGTGATGCATCCAAAAATCCTGATTTCTATAATTGGAACAAAGTCAAGATACGTTACTGTGATGGAGCATCGTTTGCAAGCCATCCTGAGGGTGAAATAAAGAATGGAAATAGACTTTATTTCAGAGGCCAGCTCATCTGGGAAGCGCTTATGGATGAACTCTTATCCGTTGGCTTGTCAAAGGCAAGGCAGGCTCTTCTTTCAGGGTGCTCTGCTGGGGGCTTGGCTACCCTTATACATTGTGATGACTTCAGAGAGCTTTTGCCGAAGGATGCAACTGTCAAGTGTCTAGCTGATGCTGGATTTTTCCTTGACGAGAAAGATGTTTCGGGAAATCATACAATGAGATCTTTCTATCATGATGTTTTCAACCTTCAGGTTGTACTCTGGTCCTCATTTGTTCTGATTTGTATAGTTAGTGATTGGATGGATGACATCATGCATGCCATATCGTCAGCCGCTGTTAGAGTTAGCTACAATCACCAATATAAGAACACTGCTAAAAGCTTACCCAAGGATTGTACAGCAACAGAAGAACCATCTAAGTGTCTCTTTCCTCAAGAAATTATCAAACGTATAAGCACCCCGCTGTTTCTTGTCAACCCAGCTTATGATTTTTGGCAGATACAACATGTCTTGGTACCAAGTGCATTAGATCCTGCTGGCTCTTGGCAGAAATGTAGGCTTAATATTCATAAATGTGATCATGCTCAGCTTGAAATTCTTCAAGGGTTCCGGGACTCTTTGCTGAAGGCACTGAAGGACTTCAAGCACAACAAGGAAGGAGGACTTTTTGTAAATTCGTGCTTCATCCATTGCCAAACATGGATGTCTGAGACATGGCATTCCCCCAATTCTCCAAGGATAAATAAGAGGGTAAGGAAAATTCGTATTTTGAACTGCATAACTGAGAAAATATGA 1341 43.7 MAISGFRALLWWRKWSKKDWAVAVICFAFIVFVLSFLSDSWHAEDAGIDHTFDLNPANDPDLVDLSLLQNAKAKGALCLDGSLPGYHFQKGFGSGSGNWVLHIEGGGWCDTVSSCSLRKMTPLGSSDYMDRRVRFSGILSSDASKNPDFYNWNKVKIRYCDGASFASHPEGEIKNGNRLYFRGQLIWEALMDELLSVGLSKARQALLSGCSAGGLATLIHCDDFRELLPKDATVKCLADAGFFLDEKDVSGNHTMRSFYHDVFNLQVVLWSSFVLICIVSDWMDDIMHAISSAAVRVSYNHQYKNTAKSLPKDCTATEEPSKCLFPQEIIKRISTPLFLVNPAYDFWQIQHVLVPSALDPAGSWQKCRLNIHKCDHAQLEILQGFRDSLLKALKDFKHNKEGGLFVNSCFIHCQTWMSETWHSPNSPRINKRVRKIRILNCITEKI 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13963702 13971891 - Maker00012685 Lcy1g1439 623351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1439 446 PANTHER NOTUM-RELATED 38 432 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Lcy1g1439 446 Pfam Pectinacetylesterase 302 432 IPR004963 GO:0016787(InterPro)
Lcy1g1439 446 Pfam Pectinacetylesterase 60 266 IPR004963 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1439 Lcy-Chr1:13963702 Lcy2g2394 Lcy-Chr2:50567219 3.64E-126 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1439 K19882 - csv:101206380 737.643