Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1441 ATGGCAGAGAACGAGGACATTCAGCCACTCGTCTGCGATAATGGAACAGGAATGGTCAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCTCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGAGGTATTTTGACTCTCAAATACCCAATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTTGCTCCCGAAGAGCATCCGGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTCTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAAGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACCTGACTGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTACTCATTCACCACCACAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCCTACATCGCTCTTGACTATGAGCAAGAATTAGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATCACCATCGGTGCTGAGCGTTTCCGATGCCCGGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAGACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCACAGCGTTGGCCCCGAGCAGCATGAAGATCAAGGTGGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGGTGAGCGTTTATTTTCAAAGCGATTTCCTCCTCATCACAATGCACTTTATGTTCGATGTAGTAGAGTCTCTAACTTTGATATTTGGCTTGTTTAAATGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCCATTGTCCACAGGAAGTGCTTCTAATCGCAAGCAAACATGTGTCGATTTCGGTACGGTTTTACCTGAGAAAGAAATTGCTGCTTGA 1296 47.07 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVSVYFQSDFLLITMHFMFDVVESLTLIFGLFKCRCGLPRLSMMSLALPLSTGSASNRKQTCVDFGTVLPEKEIAA 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13981352 13983815 - Maker00012348 Lcy1g1441 623353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1441 431 Gene3D - 10 359 - -
Lcy1g1441 431 FunFam Major actin 260 340 - -
Lcy1g1441 431 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Lcy1g1441 431 PANTHER ACTIN 8 354 IPR004000 GO:0005737(PANTHER)
Lcy1g1441 431 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lcy1g1441 431 Pfam Actin 5 359 IPR004000 -
Lcy1g1441 431 SMART actin_3 7 374 IPR004000 -
Lcy1g1441 431 PRINTS Actin signature 238 254 IPR004000 -
Lcy1g1441 431 PRINTS Actin signature 63 85 IPR004000 -
Lcy1g1441 431 PRINTS Actin signature 28 37 IPR004000 -
Lcy1g1441 431 PRINTS Actin signature 142 161 IPR004000 -
Lcy1g1441 431 PRINTS Actin signature 51 62 IPR004000 -
Lcy1g1441 431 PRINTS Actin signature 117 130 IPR004000 -
Lcy1g1441 431 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lcy1g1441 431 FunFam Actin, muscle 182 273 - -
Lcy1g1441 431 FunFam Actin, alpha skeletal muscle 3 168 - -
Lcy1g1441 431 Gene3D Actin; Chain A, domain 4 182 273 - -
Lcy1g1441 431 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lcy1g1441 431 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lcy1g1441 431 Gene3D - 140 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1128 Lcy-Chr1:10429941 Lcy1g1441 Lcy-Chr1:13981352 1.09E-257 dispersed
Lcy1g1441 Lcy-Chr1:13981352 Lcy7g0882 Lcy-Chr7:8799316 9.63E-264 dispersed
Lcy2g0448 Lcy-Chr2:3742011 Lcy1g1441 Lcy-Chr1:13981352 2.27E-60 transposed
Lcy5g0597 Lcy-Chr5:6867794 Lcy1g1441 Lcy-Chr1:13981352 7.99E-256 transposed
Lcy1g1441 Lcy-Chr1:13981352 Lcy8g1811 Lcy-Chr8:44507180 7.84E-247 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1441 K10355 - csv:101214247 724.931