Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g1448 | ATGGTCTTTCCCTCCATCCCATCTAATTATCTTGATCCAACAACCCATCAATGGCAACAGCAGCAGCAGCAACAGCAAACCGGTGGAAGCCATCAATCCGGCAGTATCATCGGAGGTGGCAGTTTTCAGCTGGTGTCGCCGCCGCGGGCGCCGCCGCAAGTGCGGCCAGGGTCGATGGCGGATCGGGCCCGAATGGCGAACCTGCCGGTGCCGGAGACGGCGCTGAAGTGCCCAAGATGTGAATCGACGAACACAAAGTTTTGTTACTTCAACAACTATAGCCTGTCTCAGCCCCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGCGCCCTCAGAAGCGTCCCCGTCGGCGGCGGCTACCGCCGGAATAATAAAAGAACTAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAACAATCTACTGCTACTGCAGCTGCAGGAGAAGCAATGAGATTAAATTACAATGCCATTTCCACACCAAATGAAGGAGCTGGGGATTCAACTCATCCCATTGGGATAGCCAACTTCTTAGGGTTTGATCAAATTCAATGGCGGCCACAGCTTCAGCTTCACCAAATGCAACCGTCGCCGTTGCTCGCAAATTCTTCGGCTCGGTTGCTTGGAAATAATGGCATCGACGCATCGTCGAGCTATAACATCGTCGGGCAGATTCAGAAGAAGATGGAGGCGACGAAAATGGAGGAAGATGGGCAACAACAGGTAAATGTGGGAAAGCCATTTTGGGGAGTTGTTGCAGGAAGTGATCGCCATTATTGGAGTGGCTTTAATCCTTCATCTTCTTCCCATCATTCACAAGTATGA | 840 | 52.14 | MVFPSIPSNYLDPTTHQWQQQQQQQQTGGSHQSGSIIGGGSFQLVSPPRAPPQVRPGSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQQSTATAAAGEAMRLNYNAISTPNEGAGDSTHPIGIANFLGFDQIQWRPQLQLHQMQPSPLLANSSARLLGNNGIDASSSYNIVGQIQKKMEATKMEEDGQQQVNVGKPFWGVVAGSDRHYWSGFNPSSSSHHSQV | 279 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 14051107 | 14053073 | - | Maker00012748 | Lcy1g1448 | 623360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g1448 | 279 | ProSiteProfiles | Zinc finger Dof-type profile. | 75 | 129 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy1g1448 | 279 | Pfam | Dof domain, zinc finger | 74 | 129 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy1g1448 | 279 | MobiDBLite | consensus disorder prediction | 12 | 40 | - | - | |
| Lcy1g1448 | 279 | MobiDBLite | consensus disorder prediction | 12 | 59 | - | - | |
| Lcy1g1448 | 279 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 53 | 202 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy1g1448 | 279 | ProSitePatterns | Zinc finger Dof-type signature. | 77 | 113 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy1g1448 | 279 | MobiDBLite | consensus disorder prediction | 120 | 144 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g1448 | Lcy-Chr1:14051107 | Lcy5g0212 | Lcy-Chr5:2041717 | 4.59E-43 | dispersed | |
| Lcy1g1448 | Lcy-Chr1:14051107 | Lcy10g1842 | Lcy-Chr10:42711740 | 1.74E-42 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19614 | None | None | None | None | Lcy | TF |
Pathway information