Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1455 ATGAGCGTGAACATAACCTCCATCAAAACCGCCTCCAATGGCGTTTGGCAAGGCGACAACCCTCTCGATTTCGCCTTCCCTCTCTTAATCCTTCAGTCCGTTCTCATCCTCCTCCTCACTCGCTTCCTCGCCCTCCTTCTCAAGCCCCTCCGCCAGCCCAAAGTCATCGCCGAGATCGTCGGCGGGATTCTTCTCGGTCCCTCTGCTTTCGGACGGAACAAAGCTTATCTCCACCGGATTTTCCCTCAATGGAGCACCCCCATTCTCGAATCCGTCGCCAGTATCGGTTTGTTGTTCTTTCTCTTTCTCGTCGGACTCGAACTCGATTTGTCCTCCATCCGCCGCAGCGGCCGCAGGGCTTTCGGTATCGCCCTCGCCGGAATCTCCGTTCCCTTCCTCTCCGGCATCGGCGTCGCTTTCATCCTCCGTAAGACCATCGACGGCGCCGACAAGGTCGGCTACGGCCAGTTCATTGTATTCATGGGTGTCGCTCTCTCCATCACCGCCTTCCCTGTTCTGGCCCGCATTTTAGCCGAGCTCAAACTCCTCACCACCCAAGTCGGCGAGACCGCCATGGCTGCCGCCGCCTTCAACGACGTCGCCGCCTGGATCCTCCTCGCACTCGCTGTCGCCCTTGCCGGTAACGGCACAGAAGGCGGGGCCCAGAAGAGTCCGTTGGTTTCCGTGTGGGTCCTACTCTCCGGAGCCGGGTTCGTGGTCTTCATGATGGTGGTGACCCGACCCGGGATGAAGTGGGTCGCGCGGCGGTGCTCGTACGAGCACGACGCCGTGGACGAGGCGTACATCTGTTTGACGTTGGTTGGAGTGCTGGTTTCGGGATTCGTGACGGATTTGATCGGAATCCATTCGATTTTTGGCGGATTTATATTCGGATTGACGGTGCCGAAAGGGGGGAGGTTCGCGGAGAGATTGATTGAGAGGATTGAGGATTTTGTGTCGGGTCTTCTTCTTCCTCTGTATTTTGCGTCGAGTGGGTTGAAGACGGACGTGGCGAAGATCAGAGGAGGAAGAGCGTGGGGGCTGCTGGCGCTGGTTATATCGACAGCGTGTGCAGGGAAGATTCTGGCGACGTTCGTGGCGGCGATGGCTTTTCTGATGCCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATCGTGCTCAATATCGGCAAGGAGAAAAAGGTTCTAAACGACGAAGTATTTGCCATATTAGTTTTAATGGCGCTATTCACAACATTCATCACGACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCGAACCCACCGGAAACTCCGCGACCTCGCCGCCGACGACTCGAACTCCGACGACGAGCTCCGAATCCTAGCCTGCCTGCACAGCTCCGGCAACGTTCCCTCTCTAATCAGCCTGACCGAGTCAACTCGCAGCACCAAAAACTCCTCCCTCAAACTCTTCGTCATGCACCTCGTCGAGCTCACCGAGCGCTCCTCGTCCATCATGATGGTCCAACGGGCTCGCAAAAACGGCTTCCCTTTCTTCGCCAGGTTCCGCAAGGGCGAGTGGCACGACCAGATGGCCGGCGCCTTCCAGGCCTACAGCCAACTGGGCCGGGTCAAGGTCCGGCCCACTACGGCAGTCTCTTCCTTGGCCACCATGCATGAGGATATCTGCCACGTGGCCGACGATAAGAGGGTGACCATGATCATCTTGCCGTTTCATCGGAATTGGAGGATGGTCGGCGGCGAGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAGCGGGTGCTTAAGAGTGCGCCTTGCTCGGTCGCGGTTCTTGTGGACCGTGGATTTGGGGCTAATGGGGCTCAGACGCCTGGGCCTGGGTCACTGGTTGCTGTGGGCCAGAGGATTTGTGTGGTGTTCTTTGGCGGGCCCGATGACAGGGAGGCGCTGGAGTTGGGTGGCCGGATGGCGGAGCATCCGGCGGTCAAGGTCACGGTGGTGAGGTTTCGGCCGTCGCCGTCCGATGGGGTTGAGGGTAGTAATGTCATTTTGCGACCTCTGCATTCTAAATCTGGCGACAACCATTATAGCTTCTCCACAGCTCCAATCAACCGGGAAAGAGAAAAGGAGCTAGATGATGTAGCAATAGCAGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTACACAGAGAGGGAGGCCAACAACATGAACATGATGGTTGAAGGGGTGGTGTCGATCGGAAAGGAAGGCGGTTACGACCTAATCGTGGTCGGGAAGGGTCGGGTTCCATCGAGCATGGTGGCGAAACTAGCCGACCGAGCAGCAGAGCACGCCGAGCTGGGACCAGTCGGAGACATATTGGCCAGCTCCGGCAGGGGAATAGTATCTTCAATACTAGTAATTCAACAACATGAAGGAGGTGCTCATACCGAAGAAACTCCAGTTTTGAATAAGCAGCCTTTGTCAATCGATGGAGCTTCAACTCATGTATAA 2511 57.03 MSVNITSIKTASNGVWQGDNPLDFAFPLLILQSVLILLLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKAYLHRIFPQWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGRRAFGIALAGISVPFLSGIGVAFILRKTIDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGTEGGAQKSPLVSVWVLLSGAGFVVFMMVVTRPGMKWVARRCSYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTVPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIRGGRAWGLLALVISTACAGKILATFVAAMAFLMPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTRTHRKLRDLAADDSNSDDELRILACLHSSGNVPSLISLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKGEWHDQMAGAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRMVGGEEENVGHGWRVVNQRVLKSAPCSVAVLVDRGFGANGAQTPGPGSLVAVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPSPSDGVEGSNVILRPLHSKSGDNHYSFSTAPINREREKELDDVAIAEFRSKWDATVEYTEREANNMNMMVEGVVSIGKEGGYDLIVVGKGRVPSSMVAKLADRAAEHAELGPVGDILASSGRGIVSSILVIQQHEGGAHTEETPVLNKQPLSIDGASTHV 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14144593 14150139 + Maker00012788 Lcy1g1455 623367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1455 836 MobiDBLite consensus disorder prediction 812 836 - -
Lcy1g1455 836 MobiDBLite consensus disorder prediction 821 836 - -
Lcy1g1455 836 Gene3D - 28 437 IPR038770 -
Lcy1g1455 836 FunFam Cation/H(+) antiporter 15 28 438 - -
Lcy1g1455 836 Gene3D - 455 789 - -
Lcy1g1455 836 Pfam Sodium/hydrogen exchanger family 38 428 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy1g1455 836 PANTHER CATION/H + ANTIPORTER 9 814 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1455 K26731 - - csv:101207589 1398.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1431 Lcy-Chr1:13856629 Lcy1g1455 Lcy-Chr1:14144593 4.96E-173 dispersed
Lcy1g1432 Lcy-Chr1:13865152 Lcy1g1455 Lcy-Chr1:14144593 0 dispersed
Lcy1g1455 Lcy-Chr1:14144593 Lcy6g0833 Lcy-Chr6:8378773 2.15E-254 dispersed
Lcy1g1455 Lcy-Chr1:14144593 Lcy8g0168 Lcy-Chr8:3957644 2.98E-224 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g0168 . 5 816 Antiporter Super Family AT2G13620 71.4 0.0e+00 1158.3
Lcy1g1455 . 75 831 Antiporter Super Family AT3G53720 69.2 6.3e-291 997.3
Lcy1g1432 . 76 791 Antiporter Super Family AT3G53720 59.8 1.2e-233 807.0
Lcy6g0834 . 83 779 Antiporter Super Family AT3G53720 50.6 6.1e-185 645.2
Lcy6g0832 . 84 785 Antiporter Super Family AT3G53720 50.5 6.3e-182 635.2
Lcy6g0833 . 86 774 Antiporter Super Family AT3G53720 50.5 8.2e-182 634.8
Lcy10g0444 . 1 205 Antiporter Super Family AT3G53720 53.7 1.5e-55 215.3
Lcy6g0834 . 1 779 Antiporter Super Family AT5G41610 70.3 1.5e-311 1065.8
Lcy6g0833 . 1 777 Antiporter Super Family AT5G41610 68.9 9.8e-303 1036.6
Lcy6g0832 . 3 796 Antiporter Super Family AT5G41610 66.9 6.6e-299 1023.8
Lcy1g1455 . 8 812 Antiporter Super Family AT5G41610 52.0 3.2e-213 739.2
Lcy10g0444 . 1 205 Antiporter Super Family AT5G41610 69.3 2.0e-74 278.1
Lcy6g0833 . 1 797 Antiporter Super Family AT4G23700 66.1 1.6e-297 1019.2
Lcy6g0832 . 11 786 Antiporter Super Family AT4G23700 65.2 3.2e-285 978.4
Lcy6g0834 . 9 796 Antiporter Super Family AT4G23700 63.6 3.9e-283 971.5
Lcy10g0444 . 1 204 Antiporter Super Family AT4G23700 70.1 1.3e-73 275.4
Lcy6g0832 . 1 786 Antiporter Super Family AT3G17630 64.3 7.8e-276 947.2
Lcy6g0833 . 5 775 Antiporter Super Family AT3G17630 64.8 1.7e-275 946.0
Lcy6g0834 . 3 779 Antiporter Super Family AT3G17630 63.2 1.8e-272 936.0
Lcy1g1455 . 2 816 Antiporter Super Family AT3G17630 51.7 8.7e-211 731.1
Lcy10g0444 . 1 205 Antiporter Super Family AT3G17630 65.4 5.2e-70 263.5
Lcy6g0833 . 1 780 Antiporter Super Family AT1G64170 58.8 2.5e-245 845.9
Lcy6g0832 . 9 794 Antiporter Super Family AT1G64170 57.1 7.7e-239 824.3
Lcy6g0834 . 1 784 Antiporter Super Family AT1G64170 56.8 1.8e-235 813.1
Lcy10g0444 . 1 205 Antiporter Super Family AT1G64170 62.0 2.1e-63 241.5
Lcy8g0168 . 5 816 Antiporter Super Family AT2G13620 71.4 0.0e+00 1158.3
Lcy6g0833 . 1 780 Antiporter Super Family AT1G64170 58.8 2.5e-245 845.9
Lcy6g0832 . 9 794 Antiporter Super Family AT1G64170 57.1 7.7e-239 824.3
Lcy6g0834 . 1 784 Antiporter Super Family AT1G64170 56.8 1.8e-235 813.1
Lcy10g0444 . 1 205 Antiporter Super Family AT1G64170 62.0 2.1e-63 241.5
Lcy6g0833 . 1 797 Antiporter Super Family AT4G23700 66.1 1.6e-297 1019.2
Lcy6g0832 . 11 786 Antiporter Super Family AT4G23700 65.2 3.2e-285 978.4
Lcy6g0834 . 9 796 Antiporter Super Family AT4G23700 63.6 3.9e-283 971.5
Lcy10g0444 . 1 204 Antiporter Super Family AT4G23700 70.1 1.3e-73 275.4
Lcy6g0834 . 1 779 Antiporter Super Family AT5G41610 70.3 1.5e-311 1065.8
Lcy6g0833 . 1 777 Antiporter Super Family AT5G41610 68.9 9.8e-303 1036.6
Lcy6g0832 . 3 796 Antiporter Super Family AT5G41610 66.9 6.6e-299 1023.8
Lcy1g1455 . 8 812 Antiporter Super Family AT5G41610 52.0 3.2e-213 739.2
Lcy10g0444 . 1 205 Antiporter Super Family AT5G41610 69.3 2.0e-74 278.1
Lcy6g0832 . 1 786 Antiporter Super Family AT3G17630 64.3 7.8e-276 947.2
Lcy6g0833 . 5 775 Antiporter Super Family AT3G17630 64.8 1.7e-275 946.0
Lcy6g0834 . 3 779 Antiporter Super Family AT3G17630 63.2 1.8e-272 936.0
Lcy1g1455 . 2 816 Antiporter Super Family AT3G17630 51.7 8.7e-211 731.1
Lcy10g0444 . 1 205 Antiporter Super Family AT3G17630 65.4 5.2e-70 263.5
Lcy1g1455 . 75 831 Antiporter Super Family AT3G53720 69.2 6.3e-291 997.3
Lcy1g1432 . 76 791 Antiporter Super Family AT3G53720 59.8 1.2e-233 807.0
Lcy6g0834 . 83 779 Antiporter Super Family AT3G53720 50.6 6.1e-185 645.2
Lcy6g0832 . 84 785 Antiporter Super Family AT3G53720 50.5 6.3e-182 635.2
Lcy6g0833 . 86 774 Antiporter Super Family AT3G53720 50.5 8.2e-182 634.8
Lcy10g0444 . 1 205 Antiporter Super Family AT3G53720 53.7 1.5e-55 215.3
Lcy3g1897 . 47 793 Antiporter Super Family AT3G52080 55.8 2.0e-239 826.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43