Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1455 ATGAGCGTGAACATAACCTCCATCAAAACCGCCTCCAATGGCGTTTGGCAAGGCGACAACCCTCTCGATTTCGCCTTCCCTCTCTTAATCCTTCAGTCCGTTCTCATCCTCCTCCTCACTCGCTTCCTCGCCCTCCTTCTCAAGCCCCTCCGCCAGCCCAAAGTCATCGCCGAGATCGTCGGCGGGATTCTTCTCGGTCCCTCTGCTTTCGGACGGAACAAAGCTTATCTCCACCGGATTTTCCCTCAATGGAGCACCCCCATTCTCGAATCCGTCGCCAGTATCGGTTTGTTGTTCTTTCTCTTTCTCGTCGGACTCGAACTCGATTTGTCCTCCATCCGCCGCAGCGGCCGCAGGGCTTTCGGTATCGCCCTCGCCGGAATCTCCGTTCCCTTCCTCTCCGGCATCGGCGTCGCTTTCATCCTCCGTAAGACCATCGACGGCGCCGACAAGGTCGGCTACGGCCAGTTCATTGTATTCATGGGTGTCGCTCTCTCCATCACCGCCTTCCCTGTTCTGGCCCGCATTTTAGCCGAGCTCAAACTCCTCACCACCCAAGTCGGCGAGACCGCCATGGCTGCCGCCGCCTTCAACGACGTCGCCGCCTGGATCCTCCTCGCACTCGCTGTCGCCCTTGCCGGTAACGGCACAGAAGGCGGGGCCCAGAAGAGTCCGTTGGTTTCCGTGTGGGTCCTACTCTCCGGAGCCGGGTTCGTGGTCTTCATGATGGTGGTGACCCGACCCGGGATGAAGTGGGTCGCGCGGCGGTGCTCGTACGAGCACGACGCCGTGGACGAGGCGTACATCTGTTTGACGTTGGTTGGAGTGCTGGTTTCGGGATTCGTGACGGATTTGATCGGAATCCATTCGATTTTTGGCGGATTTATATTCGGATTGACGGTGCCGAAAGGGGGGAGGTTCGCGGAGAGATTGATTGAGAGGATTGAGGATTTTGTGTCGGGTCTTCTTCTTCCTCTGTATTTTGCGTCGAGTGGGTTGAAGACGGACGTGGCGAAGATCAGAGGAGGAAGAGCGTGGGGGCTGCTGGCGCTGGTTATATCGACAGCGTGTGCAGGGAAGATTCTGGCGACGTTCGTGGCGGCGATGGCTTTTCTGATGCCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATCGTGCTCAATATCGGCAAGGAGAAAAAGGTTCTAAACGACGAAGTATTTGCCATATTAGTTTTAATGGCGCTATTCACAACATTCATCACGACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCGAACCCACCGGAAACTCCGCGACCTCGCCGCCGACGACTCGAACTCCGACGACGAGCTCCGAATCCTAGCCTGCCTGCACAGCTCCGGCAACGTTCCCTCTCTAATCAGCCTGACCGAGTCAACTCGCAGCACCAAAAACTCCTCCCTCAAACTCTTCGTCATGCACCTCGTCGAGCTCACCGAGCGCTCCTCGTCCATCATGATGGTCCAACGGGCTCGCAAAAACGGCTTCCCTTTCTTCGCCAGGTTCCGCAAGGGCGAGTGGCACGACCAGATGGCCGGCGCCTTCCAGGCCTACAGCCAACTGGGCCGGGTCAAGGTCCGGCCCACTACGGCAGTCTCTTCCTTGGCCACCATGCATGAGGATATCTGCCACGTGGCCGACGATAAGAGGGTGACCATGATCATCTTGCCGTTTCATCGGAATTGGAGGATGGTCGGCGGCGAGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAGCGGGTGCTTAAGAGTGCGCCTTGCTCGGTCGCGGTTCTTGTGGACCGTGGATTTGGGGCTAATGGGGCTCAGACGCCTGGGCCTGGGTCACTGGTTGCTGTGGGCCAGAGGATTTGTGTGGTGTTCTTTGGCGGGCCCGATGACAGGGAGGCGCTGGAGTTGGGTGGCCGGATGGCGGAGCATCCGGCGGTCAAGGTCACGGTGGTGAGGTTTCGGCCGTCGCCGTCCGATGGGGTTGAGGGTAGTAATGTCATTTTGCGACCTCTGCATTCTAAATCTGGCGACAACCATTATAGCTTCTCCACAGCTCCAATCAACCGGGAAAGAGAAAAGGAGCTAGATGATGTAGCAATAGCAGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTACACAGAGAGGGAGGCCAACAACATGAACATGATGGTTGAAGGGGTGGTGTCGATCGGAAAGGAAGGCGGTTACGACCTAATCGTGGTCGGGAAGGGTCGGGTTCCATCGAGCATGGTGGCGAAACTAGCCGACCGAGCAGCAGAGCACGCCGAGCTGGGACCAGTCGGAGACATATTGGCCAGCTCCGGCAGGGGAATAGTATCTTCAATACTAGTAATTCAACAACATGAAGGAGGTGCTCATACCGAAGAAACTCCAGTTTTGAATAAGCAGCCTTTGTCAATCGATGGAGCTTCAACTCATGTATAA 2511 57.03 MSVNITSIKTASNGVWQGDNPLDFAFPLLILQSVLILLLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKAYLHRIFPQWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGRRAFGIALAGISVPFLSGIGVAFILRKTIDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGTEGGAQKSPLVSVWVLLSGAGFVVFMMVVTRPGMKWVARRCSYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTVPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIRGGRAWGLLALVISTACAGKILATFVAAMAFLMPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTRTHRKLRDLAADDSNSDDELRILACLHSSGNVPSLISLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKGEWHDQMAGAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRMVGGEEENVGHGWRVVNQRVLKSAPCSVAVLVDRGFGANGAQTPGPGSLVAVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPSPSDGVEGSNVILRPLHSKSGDNHYSFSTAPINREREKELDDVAIAEFRSKWDATVEYTEREANNMNMMVEGVVSIGKEGGYDLIVVGKGRVPSSMVAKLADRAAEHAELGPVGDILASSGRGIVSSILVIQQHEGGAHTEETPVLNKQPLSIDGASTHV 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14144593 14150139 + Maker00012788 Lcy1g1455 623367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1455 836 MobiDBLite consensus disorder prediction 812 836 - -
Lcy1g1455 836 MobiDBLite consensus disorder prediction 821 836 - -
Lcy1g1455 836 Gene3D - 28 437 IPR038770 -
Lcy1g1455 836 FunFam Cation/H(+) antiporter 15 28 438 - -
Lcy1g1455 836 Gene3D - 455 789 - -
Lcy1g1455 836 Pfam Sodium/hydrogen exchanger family 38 428 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy1g1455 836 PANTHER CATION/H + ANTIPORTER 9 814 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1431 Lcy-Chr1:13856629 Lcy1g1455 Lcy-Chr1:14144593 4.96E-173 dispersed
Lcy1g1432 Lcy-Chr1:13865152 Lcy1g1455 Lcy-Chr1:14144593 0 dispersed
Lcy1g1455 Lcy-Chr1:14144593 Lcy6g0833 Lcy-Chr6:8378773 2.15E-254 dispersed
Lcy1g1455 Lcy-Chr1:14144593 Lcy8g0168 Lcy-Chr8:3957644 2.98E-224 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1455 K26731 - csv:101207589 1398.26