Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1469 ATGATGGCTTCTTCATCTGCTTTGTTGATTAAATTCTTTTCATCTCTGGTTTTCCTCTCCACACAGACGCTATCTCAGCACACCCAACTCTTCTATCCTGGATTCAATGGATCCACCAACATGATCTTGAAAGAATCCGCAGAAATTGAGAAGAATGGAATTCTCAGGCTAACGAATCATTCCCACACCATCATCGGACAGGCGTTTTACGGCTCTCCGATTCGGTTCAAAAACTCCTCCACCGGCGGTGGCGGTGGCGGAGTCTTTTCTTTCTCCACGTGTTTTGCCTTCTGCATCATCGGCGAGAGTGAAGACTACAGCGGCCATGGATTAACTTTCGCCATCGTCCCTTCCAGAAATCTCAGAGCTTGGCAGCAGGCGTTTCTTGGCCTCTTCAATCAGACCAACGTTGTCGGCAACTCCTCAAACCATATCTTCGCTGTGGAATTCGATACCATCAAGGATATTGTGCTCAACGATATCGATAACAATCATGTGGGGATCGATTTAAACGGCTTGATTTCGAACGTCTCCGCTCCGGCCGCGTATTTTGACGATGACGGCGAAGTTCACAATCTGACGCTCAAAGGTGGGGAGCCTGTTAAAGTTTGGATCGATTACGATTCTGATGAAATCACTCTGAATGTTACGATTTCGCGTTTTTCTTCAAAACCCAGAAGGCCACTTCTGTCGCTCAGAGTGGATCTTTCGTCGATTTTTAATGAAGAAATGTACATTGGCTTTACTGCTTCAACGGGTGTGCTCGCTAGCTCGCAGTACATTTTGGGGTGGAGTTTCGCCATTAATGGCCAAGCTCGAGATCTTGATCTGTCTTCACTTCCAAGTCCCCGAAAGAAGAAAACAGGGGCGAAAATCAATGTCCCTGTTTATGTTTCTGTGTCTGTAACTGTGAGTGTTTTGGCGATCTTTATCGCTTTCGGTGTTTATCATCTCTTCAGAAAGTACAAGAAATCCGACGGAATCGAGCCGTGGGAGCTTCGAATCGGACCCCATCGATATCCGTACAGAGAGCTTAGAAAAGCCACAAGAAATTTCAGCGATAAGGAGATTCTTGGGCATGGCGGATTCGGGAAAGTATACAGAGGAATCCTTCCGATTTCGAAAACCCAAATTGCCGTTAAGCGAATTTCGCACGATTCGAAACAGGGTCTCCGGGAATTCGTGACGGAAATCGCCACAATCGGAATGCTCCGTCACCGGAATCTGGTTCAGTTCCTCGGATGGTGTCGCCGGCGGCAAGATCTGCTTCTGGTTTACGAATTCATGGCGAATGGGAGCTTGGATAACTATCTATTCGACGACCCGAAAACGATTCTGAATTGGGAACAGAGATTCAAGATCATAAAGGGAGTTGCCTCTGCTCTGCTTTATCTTCACGAGGGTTATAAACAGGTGGTGATTCACAGAGACGTGAAGGCGAGCAATGTGTTATTAGACGGCGATTTGAACGGGAAATTGGGGGATTTCGGGCTCGCGAGGGTGTACGAGCACGGGTCGGATCCGGGGACGACTCGGGTCGTCGGAACTTTGGGGTATTTGGCGCCGGAGCTGCCGAGAACAGGGATATCGACGACGAGCTCCGACGTGTACGCGTTTGGAGCTCTGATGCTGGAAGTGACTTGCGGGCGGCGGCCGGTGGAGGTCAAGGCGCTGCCGGAGGAGATGACGTTGGTTGATTGGGTTTGGGATAAATACAGAGAAGGGCGGCTTTTGGCGGTCGTCGATCCGAAGCTCCCGGGAGATTACGATCAGACTGAGGCGGCGATGGTGTTGAGATTGGGGGTTATGTGTTCGAACAATGAACCGAATCAACGGCCGAGTATGAAGCAGGTTGTGAGATGTTTGGACGGAGAAATTGGCGTCGCCGAAGAGTGGAAGGCGCCGGGCGGCGGTGGTAACGGCGGCGGGAATGACGGCGGTGCGGTGGGGGATTTTCTTGTGTCTTTTACGTCTAGCTCGATAAGCGGAGACAGCTCCCTTAAGCTTTCGGGTTAA 2016 50.0 MMASSSALLIKFFSSLVFLSTQTLSQHTQLFYPGFNGSTNMILKESAEIEKNGILRLTNHSHTIIGQAFYGSPIRFKNSSTGGGGGGVFSFSTCFAFCIIGESEDYSGHGLTFAIVPSRNLRAWQQAFLGLFNQTNVVGNSSNHIFAVEFDTIKDIVLNDIDNNHVGIDLNGLISNVSAPAAYFDDDGEVHNLTLKGGEPVKVWIDYDSDEITLNVTISRFSSKPRRPLLSLRVDLSSIFNEEMYIGFTASTGVLASSQYILGWSFAINGQARDLDLSSLPSPRKKKTGAKINVPVYVSVSVTVSVLAIFIAFGVYHLFRKYKKSDGIEPWELRIGPHRYPYRELRKATRNFSDKEILGHGGFGKVYRGILPISKTQIAVKRISHDSKQGLREFVTEIATIGMLRHRNLVQFLGWCRRRQDLLLVYEFMANGSLDNYLFDDPKTILNWEQRFKIIKGVASALLYLHEGYKQVVIHRDVKASNVLLDGDLNGKLGDFGLARVYEHGSDPGTTRVVGTLGYLAPELPRTGISTTSSDVYAFGALMLEVTCGRRPVEVKALPEEMTLVDWVWDKYREGRLLAVVDPKLPGDYDQTEAAMVLRLGVMCSNNEPNQRPSMKQVVRCLDGEIGVAEEWKAPGGGGNGGGNDGGAVGDFLVSFTSSSISGDSSLKLSG 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14279036 14281051 + Maker00012378 Lcy1g1469 623381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1469 671 CDD STKc_IRAK 358 624 - -
Lcy1g1469 671 SMART serkin_6 352 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1469 671 Pfam Legume lectin domain 29 280 IPR001220 GO:0030246(InterPro)
Lcy1g1469 671 FunFam L-type lectin-domain containing receptor kinase S.4 429 634 - -
Lcy1g1469 671 Gene3D Transferase(Phosphotransferase) domain 1 429 633 - -
Lcy1g1469 671 CDD lectin_legume_LecRK_Arcelin_ConA 28 270 IPR001220 GO:0030246(InterPro)
Lcy1g1469 671 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524(InterPro)
Lcy1g1469 671 FunFam Lectin-domain containing receptor kinase A4.3 337 428 - -
Lcy1g1469 671 FunFam L-type lectin-domain containing receptor kinase S.4 26 274 - -
Lcy1g1469 671 SUPERFAMILY Protein kinase-like (PK-like) 327 622 IPR011009 -
Lcy1g1469 671 Gene3D - 27 278 - -
Lcy1g1469 671 Pfam Protein kinase domain 353 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1469 671 Gene3D Phosphorylase Kinase; domain 1 338 428 - -
Lcy1g1469 671 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1469 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1469 671 PANTHER - 35 626 IPR050528 GO:0005886(PANTHER)
Lcy1g1469 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 282 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1469 Lcy-Chr1:14279036 Lcy5g0186 Lcy-Chr5:1847371 2.25E-278 dispersed
Lcy1g1468 Lcy-Chr1:14238402 Lcy1g1469 Lcy-Chr1:14279036 1.58E-193 tandem
Lcy1g1469 Lcy-Chr1:14279036 Lcy1g1470 Lcy-Chr1:14287953 1.67E-268 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65668 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1469 - - - 0.0