Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1470 ATGGTTTCAATTCTCCTCACCATCTTCCTCATTGCCACAACTTTTCTCTCCATCCAAACACAATCCCAACTCGACGACGAGCTCTTCCATGCCGGATTCAGTCATGGAGACTCCAACATAACCTTAGACAACGCAGCACAGATTCAGAAAAATGGAGTCTTGGCCTTAACAGACCACTCACAAAGATTAAAATACGGCCACGCTTTCCATACCTTCCCTTTTCAGTTCAAGAACTCCTCCAATGGCAGAGCCTTCTCCTTCTCCACCTCTTTTGCTTTCACCATCATCCCTGAAAATCCTCATTCCAGCGGCCATGGCTTCACTTTCACCATCGCACCTTCGCACAGCTTCCCAGGTTTTCCCAGACAGTTTCTGGGTCTTCCCAATTTAATCCATAATGGCAATTTCTCTAAACATATCATCGCCGTCGAATTCGACACTTTTCAAGATCACGAATTCAGAGACATCAACGACAACCACGTCGGCGTCGATATCGGCAGCTTCGTGTCCAAGGCAGCCGTTGCCGCCGCTTACTTCACTGACGACGGCGAGAAGAAACAAGAGTTGAGTCTCAAGGGTGGGAAATCGGTTATCAAAGCTTGGATTGACTATGATTCGATCCATAATTCTCTCAATGTCTCGATTTCTCCTTTTAATTCAAAACCCAGAATGCCGATTCTGTCGTATGAAGTCGATCTGTCGCCGATTCTGAGCGAATTTATGTTCATCGGATTCTCTGCTTCCACTGGCTTGTACGGTAGTTCCCATTTGATTTTGGGTTGGAGCTTCAAGATGAACGGCCAAGCTCGAGAACTCGATATTTCTTCTCTTCCTTCGCCATTCAATCGCCGGTCATCTAAATTAATAGTACGAATCTCTGTTTTAGCATCAATTCTCACAGTCTCTGTCATTTCTGTAGCTGTTTATATAATCAAAATGATCAAGAATGACGATCGGATTGAGTTATGGGAGTTTCAATTAGGCCCACATCGGTATTCCTACAAAGAGCTCCACAGAGCCACGAGAGGATTCAGAGACAAGGAGCTCCTCGGCCATGGCGGATTCGGGAAGGTTTACAGAGGAACACTTCCAAATTCCAAAACCCAAGTCGCCGTTAAGCGAATTTCAAACGAATCGAAACAGGGTCTTCGCGAATTCGTGTCGGAAATCGCCACAATCGGTAAACTCCGTCACCGGAATTTAGTTCAGCTCTTGGGATGGTGCCGTCGCCGGCAAGATCTTCTTCTTGTCTACTATCACATGGAGAATGGAAGCTTGGATAAATACCTTTTCGACAACCCGAAAAAGAATCTGAATTGGGAACAGAGATTCAGAATCATAAAGGGGGTCGCCTCTGCTCTGCTTTATCTTCACGAGGGATACGAACAGGTGGTGATTCACAGAGACGTGAAGGCGAGCAATGTGTTATTAGACAGCGATTTGAACGGCAAATTGGGGGATTTCGGGCTCGCGAGGGTGTACGAACACGGGTCGGATCCGGGGACGACCCTGGTCGCCGGAACTTTGGGGTATATGGCGCCGGAGCTGGCGAGAACGGGGAAATCGACGACGAGTTCGGATGTTTATGCGTTCGGGGAGTTGATGCTGGAAGTGGCGTGTGGGCGGCGGCCGGTGGAGATGAAGGCGGCGCCGGAGGAGATGGTGTTGGTGGATTTGGTGTGTGAGAAAAACAGAGAGGGGAAGATTTTGGAAGTGGTGGATGGGAAGCTTGAGGGGGAATTCGATGAGAGTGAAATGGCGATGGTGTTGAGATTGGGAGTTATGTGTTCGGATATGGCGGCGGAGCGACGGCCGAGTATGAGGCAGGTGGTGCGGTGTTTGGACGGCGAAATTGAAATTGGGGTCGCCGGCGGTGAGAGGGATGGTGGCAAAGTTCAGGGTGAAGGGTTGGTGGAATTTTTGCTGTCGCTTTCGTTTTCTTCTGTTAGTGATGATAACTCTTCCAACATTAATAGAGATAGGGATTCAAACATGTGA 1998 48.3 MVSILLTIFLIATTFLSIQTQSQLDDELFHAGFSHGDSNITLDNAAQIQKNGVLALTDHSQRLKYGHAFHTFPFQFKNSSNGRAFSFSTSFAFTIIPENPHSSGHGFTFTIAPSHSFPGFPRQFLGLPNLIHNGNFSKHIIAVEFDTFQDHEFRDINDNHVGVDIGSFVSKAAVAAAYFTDDGEKKQELSLKGGKSVIKAWIDYDSIHNSLNVSISPFNSKPRMPILSYEVDLSPILSEFMFIGFSASTGLYGSSHLILGWSFKMNGQARELDISSLPSPFNRRSSKLIVRISVLASILTVSVISVAVYIIKMIKNDDRIELWEFQLGPHRYSYKELHRATRGFRDKELLGHGGFGKVYRGTLPNSKTQVAVKRISNESKQGLREFVSEIATIGKLRHRNLVQLLGWCRRRQDLLLVYYHMENGSLDKYLFDNPKKNLNWEQRFRIIKGVASALLYLHEGYEQVVIHRDVKASNVLLDSDLNGKLGDFGLARVYEHGSDPGTTLVAGTLGYMAPELARTGKSTTSSDVYAFGELMLEVACGRRPVEMKAAPEEMVLVDLVCEKNREGKILEVVDGKLEGEFDESEMAMVLRLGVMCSDMAAERRPSMRQVVRCLDGEIEIGVAGGERDGGKVQGEGLVEFLLSLSFSSVSDDNSSNINRDRDSNM 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14287953 14289950 + Maker00013094 Lcy1g1470 623382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1470 665 SMART serkin_6 344 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1470 665 ProSiteProfiles Protein kinase domain profile. 344 618 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1470 665 Gene3D Phosphorylase Kinase; domain 1 329 420 - -
Lcy1g1470 665 SUPERFAMILY Protein kinase-like (PK-like) 325 612 IPR011009 -
Lcy1g1470 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1470 665 Gene3D Transferase(Phosphotransferase) domain 1 421 623 - -
Lcy1g1470 665 PANTHER - 32 618 IPR050528 GO:0005886(PANTHER)
Lcy1g1470 665 FunFam L-type lectin-domain containing receptor kinase S.4 421 623 - -
Lcy1g1470 665 CDD STKc_IRAK 350 616 - -
Lcy1g1470 665 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524(InterPro)
Lcy1g1470 665 CDD lectin_legume_LecRK_Arcelin_ConA 32 267 IPR001220 GO:0030246(InterPro)
Lcy1g1470 665 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 280 IPR013320 -
Lcy1g1470 665 ProSitePatterns Legume lectins beta-chain signature. 141 147 IPR019825 -
Lcy1g1470 665 Gene3D - 29 275 - -
Lcy1g1470 665 FunFam L-type lectin-domain containing receptor kinase V.9 25 268 - -
Lcy1g1470 665 Pfam Legume lectin domain 30 278 IPR001220 GO:0030246(InterPro)
Lcy1g1470 665 FunFam L-type lectin-domain containing receptor kinase S.1 329 420 - -
Lcy1g1470 665 Pfam Protein tyrosine and serine/threonine kinase 347 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1470 Lcy-Chr1:14287953 Lcy5g0186 Lcy-Chr5:1847371 2.39E-276 dispersed
Lcy1g1469 Lcy-Chr1:14279036 Lcy1g1470 Lcy-Chr1:14287953 1.67E-268 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65669 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1470 - - - 0.0