Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1473 ATGGAAACCAATCTCTCCTTTCTCTTTCTTCTCATTTTACTCTCACTCTTCCTCTGCTGCCTGGCCAAGCGCTGCCCGGACTGCGGCCGCTCGCCGGTGCCGTACCCACTAAGCACGCGCCCGGACTGCGGCGACCCTCTTTACAGAGTCCGGTGCACCGCCGGCGAGCTCTGGTTCGAGTCCGTCAATGGGTCTTCCTATTTGATCACTTCCGTTAATCCCGTGGCACAGAGGCTGATCGTCCGGCCGCCGGGGTTGGCCAAAAACGCCTGCGTTTCGTCGGATTTTGGGAGCCATGGTTTTTGGCTCGGCACTGGCCTTCCTTTCACCATTACCAATAGAAACACTGTTCTGCTCTTCAACTGTTCGATGGAAGTTCTCGAAAAAAATTGGAACTGTTCGGCTAATAGCGTCTGTCATGACTTCATTCGGCAGAATCCGGTGGCGATGGCGGCGTGTAAGGCGGCGCCGACGTGTTGTTGGTATACAAATGGAGGGTCCATCACTGAGTATAGAATCAGGGTGCGGAAGGAGCGGTGTTCGGCTTATGAATCTTTTGTGAATTTGGGTGGTTCTGTTCCGGCGAAGAAGTGGCCGGAACCTGGGGTGGAGATTCAATGGGCACCGCCACGAGAGCCGCCGTGTCGAGTGGATGTGGATTGCCGGAATTGGGAGAATTCTGCTTGTTTGCCGGACCCTGCAAATGCCCGCCAGAGGAGGTGCTTCTGCAAGGTGCCTTTCAAGTGGGATCCTGTGAATGGCTTGTGTAATGGCAACAATGTGAAAATACAGAACAAGAAAACTCACAAGAAGCATAAGAAGATGCCTGCTATTCTTGGAGGAATGGCGGGAGTACTTGCAATGATGATTGGAGGATCGACTATGTTTGTAGTTTTCAAAAGACGTCGACAGATTCCGAAAGGGAACGAACTGAGTTCGAAACAAGTTCGCGAAGTGATTCTAAGTGCCAACAGCAGTGGCAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCTACAAACAACTTCTCTAAAGAGAACTTGCTTGGCTCTGGTGGCTATGGAGAGGTCTTCAAAGGCAGCCTAGAAGATGGAACCTTAATAGCTGTTAAGCGTGCCAAGTTGGGGAGCATGAAGGGAATCGATCAAATCCTGAACGAGGTTCGAATTCTTTGTCAGGTGAACCATCGATTCCTTGTTCGTCTACTTGGATGTTGTCTCGAACTCGAGCAACCCCTGTTAATATATGAGTACATCTCAAATGGGAACCTATTTGATCACCTTCATGGAAATACAAGTTCAAGCAAATGGCCACCGCTGACATTGAGTCGTCGACTCTACATTGCTCACCAAACAGCTGATGGCCTTGCCTATCTACACACTTCAGCCATGCCAAGAATCTATCACCGAGACATAAAATCAAGCAATATTCTACTAGATGAGAAGTTGAATGCTAAAGTTGCCGATTTCGGGCTTTCTAGATTGGCTGTTACTGAATCAAGCCATATTACAACTGGGGCTCAGGGAACATTAGGTTATCTGGACCCAGAATATTACCTTAATTTTCAATTGACTGACAAGAGTGATGTTTACAGTTTTGGAGTCGTCATGTTGGAGCTATTGACTTCTGAGAAAGCCATTGATTTTAATAGAGAAGAAGAAGATATTAATTTAGCAGTTTATATCAAGAAGATTATCAAAGAAGACAGATTGTTGGAGGTTGTTGATCCTGTGATTAAAGAGAGAGCAAGCAGAGTTGAAATGGAGATAATCAAGGCATTAGGGTCTCTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAGAACAGACCTGCCATGAAAGAAGTTGCTGATGAGCTAGCCAACATTATTTCCATTCTTAATAGTGAGGTTCCAAATATTGACCAACTGTAA 1917 47.05 METNLSFLFLLILLSLFLCCLAKRCPDCGRSPVPYPLSTRPDCGDPLYRVRCTAGELWFESVNGSSYLITSVNPVAQRLIVRPPGLAKNACVSSDFGSHGFWLGTGLPFTITNRNTVLLFNCSMEVLEKNWNCSANSVCHDFIRQNPVAMAACKAAPTCCWYTNGGSITEYRIRVRKERCSAYESFVNLGGSVPAKKWPEPGVEIQWAPPREPPCRVDVDCRNWENSACLPDPANARQRRCFCKVPFKWDPVNGLCNGNNVKIQNKKTHKKHKKMPAILGGMAGVLAMMIGGSTMFVVFKRRRQIPKGNELSSKQVREVILSANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGSLEDGTLIAVKRAKLGSMKGIDQILNEVRILCQVNHRFLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSRRLYIAHQTADGLAYLHTSAMPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAVTESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDINLAVYIKKIIKEDRLLEVVDPVIKERASRVEMEIIKALGSLAAACLDEKRQNRPAMKEVADELANIISILNSEVPNIDQL 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14369832 14372353 + Maker00013462 Lcy1g1473 623385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1473 638 FunFam Wall-associated receptor kinase-like 20 421 633 - -
Lcy1g1473 638 SMART serkin_6 345 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1473 638 Pfam Protein tyrosine and serine/threonine kinase 348 621 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1473 638 Gene3D Transferase(Phosphotransferase) domain 1 421 633 - -
Lcy1g1473 638 Gene3D Phosphorylase Kinase; domain 1 306 420 - -
Lcy1g1473 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 23 624 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lcy1g1473 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1473 638 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524(InterPro)
Lcy1g1473 638 CDD STKc_IRAK 351 624 - -
Lcy1g1473 638 ProSiteProfiles Protein kinase domain profile. 345 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1473 638 FunFam Wall-associated receptor kinase-like 20 308 420 - -
Lcy1g1473 638 SUPERFAMILY Protein kinase-like (PK-like) 327 621 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1473 Lcy-Chr1:14369832 Lcy9g1023 Lcy-Chr9:33684062 7.34E-87 dispersed
Lcy9g1947 Lcy-Chr9:44467088 Lcy1g1473 Lcy-Chr1:14369832 5.39E-23 dispersed
Lcy4g1810 Lcy-Chr4:44124214 Lcy1g1473 Lcy-Chr1:14369832 2.61E-42 transposed
Lcy1g1473 Lcy-Chr1:14369832 Lcy10g2238 Lcy-Chr10:46187843 3.61E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65670 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1473 - - - 0.0