Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1484 ATGGCTTCGTGCCGCATAAATCTTCTTCCTCACCGGTGTTCTCCCGGAACGCCGCGCTTTGGCCTCACTTCTTCCCTCCAAAACCCTAATCCTCCTCCCCAATTACTTGCTCCCTTTCCCTCTTCTCTCCTCAATTCCAATAAGTTATCGTATTCCAGAATCCGCCGCCGAAGTTTTATTGCCATGAATGCTCACATGGCCACCGAAGCCAAGCCTGTCTCTGAGGATAAAATGCTTGTTTATGTTCCGCCTCATCCGTTGATCAAGCACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAGTGCAATGGCAGAGCTAGGGAGGCTACTTATTTATGAAGCTTCAAGGGATTGGTTGCCTACTGTAACGGGGGATATACAGTCACCCATGGGTGTTGCTTCAGTTGAATTTATTGATCCAAGAGAGCCGGTGGCGATAATTCCCATCCTCAGAGCTGGTCTAGCTCTGGCAGAACACGCATCATCTGTTTTGCCTGCAACAAAACTGTACCATCTTGGAATAAGCAGGGATGAGGAGACCCTTCAGCCAACTGTATATCTTAACAAGTTACCTGAAAATTTTCCTGAAGGATCTCGAATCTTTGTGGTTGATCCCATGCTTGCAACAGGTGGCACAATAGTGGCAGCTCTTGACCTTCTAAAGGAACGTGGAATTGGCAACAAGCAAGTAAAAGTGATATCTGCCGTTGCTGCCCCTCCCGCCCTTCAAAAGCTCAGCGAGAAGTTTCCAGGGCTACACGTATACACCGGAATTATTGACCCGACAGTTAATGACAAAGGGTTTGTTTATAATTCCTGGACTTGGAGATGCTGGGGATCGCAGTTTCGGCACATGAAATCGTTTCATCAAGCTTCAGAAATTCTCATCTCTTATTGTTGCTTGGTATGA 927 46.49 MASCRINLLPHRCSPGTPRFGLTSSLQNPNPPPQLLAPFPSSLLNSNKLSYSRIRRRSFIAMNAHMATEAKPVSEDKMLVYVPPHPLIKHWVSVLRNEQTPCPIFKSAMAELGRLLIYEASRDWLPTVTGDIQSPMGVASVEFIDPREPVAIIPILRAGLALAEHASSVLPATKLYHLGISRDEETLQPTVYLNKLPENFPEGSRIFVVDPMLATGGTIVAALDLLKERGIGNKQVKVISAVAAPPALQKLSEKFPGLHVYTGIIDPTVNDKGFVYNSWTWRCWGSQFRHMKSFHQASEILISYCCLV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14470805 14474719 + Maker00013081 Lcy1g1484 623396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1484 308 FunFam Uracil phosphoribosyltransferase 77 278 - -
Lcy1g1484 308 CDD PRTases_typeI 145 265 IPR000836 -
Lcy1g1484 308 SUPERFAMILY PRTase-like 80 276 IPR029057 -
Lcy1g1484 308 Gene3D - 69 280 IPR029057 -
Lcy1g1484 308 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 81 266 IPR050054 -
Lcy1g1484 308 Pfam Uracil phosphoribosyltransferase 82 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1484 K00761 - - csv:101209447 470.7
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy8g1180 . 69 556 PRT Gene Family AT2G16570 84.1 1.2e-241 833.2
Lcy8g1180 . 61 556 PRT Gene Family AT4G34740 83.5 1.4e-242 836.3
Lcy8g1180 . 34 529 PRT Gene Family AT4G38880 70.6 4.8e-197 684.9
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy12g1805 . 6 104 PRT Gene Family AT4G22570 80.8 1.2e-43 172.9
Lcy6g2077 . 1 97 PRT Gene Family AT4G22570 81.6 1.5e-41 166.0
Lcy13g2129 . 102 194 PRT Gene Family AT4G22570 79.6 4.0e-39 157.9
Lcy13g1798 . 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Lcy12g1805 . 1 96 PRT Gene Family AT4G12440 82.3 2.6e-40 161.8
Lcy6g2077 . 1 96 PRT Gene Family AT4G12440 80.2 1.8e-38 155.6
Lcy13g2129 . 98 193 PRT Gene Family AT4G12440 78.1 3.5e-37 151.4
Lcy13g1798 . 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy10g1606 . 1 188 PRT Gene Family AT1G71750 65.8 1.1e-69 260.4
Lcy12g0160 . 19 482 PRT Gene Family AT1G55810 74.6 9.3e-202 700.3
Lcy12g0160 . 80 482 PRT Gene Family AT3G27440 75.7 6.4e-181 630.9
Lcy12g0160 . 1 483 PRT Gene Family AT3G27190 86.4 1.3e-246 849.4
Lcy1g1484 . 12 275 PRT Gene Family AT3G53900 65.9 4.1e-97 352.1
Lcy12g0160 . 10 482 PRT Gene Family AT4G26510 76.1 1.9e-213 739.2
Lcy12g0160 . 1 482 PRT Gene Family AT5G40870 86.3 1.5e-245 845.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39