Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1487 ATGGCGGAGGGTTTTGAAGTCTACCATGTCCCACAGCAAAGCAGGAGAGATAAGCTTCGAGTGGGAATTGGAATTGCCACTGGTAATAATAATAATAATAATAATAATAATAACAATAATTTCCATATCGCCACTGGTTTACTTCCTTTATATGATCCATCTTCTTTAATTTCCTCCGATTTTGATTTCCACCCACTTCCTCAAAACCCCTCTTTTCAACTTCATCATCATCATATTCACAACAATCCTTCTCTCAATAATTACCCTCCCGCTGCCGCCGCTTTCACCGCCGCCGACCATGTCCCCCCGCTCCTCCCCGACCAACCCTTGTCCCTCGAGCTCAACCTCCAGCAGCGCTACGCCTCCGCGGCCGCCGTTTTTGCTCCTCATGATTCTGCCGCCCTCCCTCTTCTTGGCTACTCCGCCTCCGTCTTGAAGGGCTCCAAATTCTTGAAGCCAGCTCAGCAGCTGCTCCACGATTTGTTTGACTGCGGCGGTCCTAACCCCGACAAGCTGCCGCCGGATTCCGCCCTTGTCGACCCTCTTCTCGAAAGCTTGGGCGGCGATATTCCCCCCGCCGCCGCCGCCGATCATGACCCGATCAGCTCTGCCGATGATGGAGCCGACAGCCGGAGGAAGAAATCTAGGCTTATTACCATGCTCGACGAGGTTTACAGAAGATATAAGCTTTACTATCAACAGATGCAAGCAGTGGTTACGACATTCGAGTACGCTGCAGGGCTTGGCAATGCAGCTCCCTACGTGAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAGGTTCTTAAAGAACGCCATTGCCGACCAGCTCCAATTCAACAAGCAGCACCATCATCAGTCTTACAACCCATATTGCCAAAGATCCATTCACAACAACAATCCCGCATTCCTCGACCACCAACCCGTCTGGCGGCCGCAGAGGGGCCTCCCTGAGAGCGCCGTCACCGTCCTCCGAGCCTGGCTCTTCGAACACTTCCTCCATCCTTATCCTACTGACACTGACAAGCTCATGCTGGCCAACCAAACCGGTCTCTCACGAAGCCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGCTTGAAACAAGGCAAGCTCAAAAATCTCAGCAGAGGGAAGCCAATAATGGAAATGGCTTAAACAACAACAACGATCATCTTTCATCCACAAACGAATCATTGAAAGCCGAGCACAACAACAACAACAACGCATCTTCTTCAAATCACGATCACCACCCACTGGACTTATCCAACTCCAATTTCTTTCCGACCCACCACCCTCATGCGGCGGCCGGAGCCGCCACGATGGGCGGCGGCAACGTGTCCTTAACTCTGGGGCTCCACCAGAACCACGGCGGGATCACTCTGACAGAGCCGTTTCCGATCAATGCAGCTCAGCATTTTAACCTTGGGTTAGAAGCCAACGGTGAAGGGTTTGTAAATGAGTGGTTTTGA 1506 51.2 MAEGFEVYHVPQQSRRDKLRVGIGIATGNNNNNNNNNNNNFHIATGLLPLYDPSSLISSDFDFHPLPQNPSFQLHHHHIHNNPSLNNYPPAAAAFTAADHVPPLLPDQPLSLELNLQQRYASAAAVFAPHDSAALPLLGYSASVLKGSKFLKPAQQLLHDLFDCGGPNPDKLPPDSALVDPLLESLGGDIPPAAAADHDPISSADDGADSRRKKSRLITMLDEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYVNLAVKAMFKHFRFLKNAIADQLQFNKQHHHQSYNPYCQRSIHNNNPAFLDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQQREANNGNGLNNNNDHLSSTNESLKAEHNNNNNASSSNHDHHPLDLSNSNFFPTHHPHAAAGAATMGGGNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14543951 14547808 - Maker00012159 Lcy1g1487 623399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1487 501 ProSiteProfiles 'Homeobox' domain profile. 307 370 IPR001356 GO:0003677(InterPro)
Lcy1g1487 501 SMART prehox3 138 275 IPR006563 -
Lcy1g1487 501 SUPERFAMILY Homeodomain-like 312 377 IPR009057 -
Lcy1g1487 501 Pfam Associated with HOX 144 274 IPR006563 -
Lcy1g1487 501 MobiDBLite consensus disorder prediction 381 452 - -
Lcy1g1487 501 Pfam Homeobox KN domain 327 366 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g1487 501 Gene3D - 313 375 - -
Lcy1g1487 501 MobiDBLite consensus disorder prediction 192 212 - -
Lcy1g1487 501 FunFam BEL1-like homeodomain protein 9 313 375 - -
Lcy1g1487 501 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 414 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy1g1487 501 SMART HOX_1 310 374 IPR001356 GO:0003677(InterPro)
Lcy1g1487 501 CDD homeodomain 310 371 IPR001356 GO:0003677(InterPro)
Lcy1g1487 501 MobiDBLite consensus disorder prediction 381 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1487 Lcy-Chr1:14543951 Lcy8g2020 Lcy-Chr8:46432224 1.15E-55 dispersed
Lcy1g1487 Lcy-Chr1:14543951 Lcy5g0165 Lcy-Chr5:1667752 2.98E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19618 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1487 - - - 0.0