Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1496 ATGGCGGAAGAACTGCAGGTCTTTGGTTTGTGGTCAAGTCCCTTCAGTGGCAGAGTGGAGGTGGCTCTCAAACTCAAAGCCGTGGAATACGGATACATCGAGGAAGATGTGCTGAACAAGAAGAGCGATTTGCTACTGAAATACAACCCAATTTACAAGAAGGTGCCTGTCCTCGTCCACCATGGCAAACCCATTTCAGAGTCTCTTGTCATCCTCGAATACATCGATGAAAACTGGAGAGACAATTATCCCATCTTGCCCCAAGATTGCCATGAAAGGGCTCTTGCCAGGTTTTGGGCTGCGTATATCGATGACAAGGATTTCAAATATGCTATTGACAATGATAAAAACCATGTTGCGTCTGCGGTACTAAAAGCTGCTGGAAGCGAAGGAGAAGAGAGAGAAAAGGCTGTAGAAGAAGCGCAGAAGACGTTGGAACCACTTGAGAAAGAGCTTGAAAGCAGCAAGTTGTTCGGAGGAGAAAGAATTGGGTTTGTGGACATTGTAGGCACCGTCGTGGCCTACTGGTTTCCTGCCATTGAAGAAGCTTTAGGGATTGAGCTGCTGAGAACCCACAGGTTTCCAAACCTCAGAAAATGGAGTGAAGAGCTTACGAATCACGACGTGGTGAAGGAGGTTCTGCCTAAAAGGGATGAGCTTGTTGCCTATTTGCAAGCTATTTTTAGGAAACACTAG 696 46.41 MAEELQVFGLWSSPFSGRVEVALKLKAVEYGYIEEDVLNKKSDLLLKYNPIYKKVPVLVHHGKPISESLVILEYIDENWRDNYPILPQDCHERALARFWAAYIDDKDFKYAIDNDKNHVASAVLKAAGSEGEEREKAVEEAQKTLEPLEKELESSKLFGGERIGFVDIVGTVVAYWFPAIEEALGIELLRTHRFPNLRKWSEELTNHDVVKEVLPKRDELVAYLQAIFRKH 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14683740 14685203 + Maker00012864 Lcy1g1496 623408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1496 231 CDD GST_N_Tau 5 79 - -
Lcy1g1496 231 SUPERFAMILY GST C-terminal domain-like 77 229 IPR036282 -
Lcy1g1496 231 Gene3D Glutaredoxin 1 88 - -
Lcy1g1496 231 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Lcy1g1496 231 Pfam Glutathione S-transferase, C-terminal domain 131 207 IPR004046 -
Lcy1g1496 231 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 225 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lcy1g1496 231 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 224 IPR010987 -
Lcy1g1496 231 SFLD Main.3: Omega- and Tau-like 2 229 IPR045073 -
Lcy1g1496 231 FunFam Tau class glutathione S-transferase 86 231 - -
Lcy1g1496 231 SFLD Glutathione Transferase (cytosolic) 2 229 IPR040079 -
Lcy1g1496 231 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
Lcy1g1496 231 Gene3D - 89 231 - -
Lcy1g1496 231 FunFam Tau class glutathione S-transferase 1 88 - -
Lcy1g1496 231 CDD GST_C_Tau 91 227 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lcy1g1496 231 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1496 Lcy-Chr1:14683740 Lcy1g1517 Lcy-Chr1:14949582 4.56E-111 dispersed
Lcy1g1495 Lcy-Chr1:14672709 Lcy1g1496 Lcy-Chr1:14683740 1.27E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1496 K00799 - csv:105434443 285.034