Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1498 ATGTATGAATCCCGGCCGGAAAAAAGGGTGGTTCGGCCGGGATTTTCAACCTGTCCGGCCGAGATTGGACCGGAAGAAATTAAAGAAATGGCAGCTGAACAAGTGCAGGTCTTTGGTTTCCGGTCGGGCCCCTTCAGTCTGAGAGTGGAGTTGGCTCTCAGGCTCAAAGGCGTGGCTTACGAACACATTGAGGAAGATTTGCTGAACAACAAGAAGAGCGATTTGCTTCTGAAATACAACCCAATCTTCAAGAAGGTGCCTGTCCTCGTCCATCATGGCAAACCCATTTTAGAGTCTCTGGTCATCCTCGAATACATCGAAGAAACTTGGAGGGACAACCCCATCTTCCCCCAACATCCCCATGAGAAAGCTCTTGCGAGGTTTTGGGCTAAGTATATCGATGACAAGGTTCTGGCCGCATTACAGAAATTTCCTTCATGCAAAGAAGAAGAAGAGAGAGAGAAGGCTATAGAAGAAGCGCAGGAAATATTAGAACCACTTGAGAAAGAGTTAAAAGACAAGAAGTTCTTTGGAGGAGAAAAAATTGGATTTGTGGACATTGTCGGCCTCGTTTTGGCCCGCTGGATTCCTGCCACTGAAGAAGCTGGAGGGTTCGAGCTGCTGACAAGCCAGAGGTTCCCAAACCTAAAAACATGGAGTGAAGAGTTTGTGAATCACAGCGTGGCAAAGGAGGTTCTGCCTCAGAAAGATGCACTGGTTGCCTTTTTGAAAAACGTTGCGTTTAATCGAAAAAACTAG 759 46.9 MYESRPEKRVVRPGFSTCPAEIGPEEIKEMAAEQVQVFGFRSGPFSLRVELALRLKGVAYEHIEEDLLNNKKSDLLLKYNPIFKKVPVLVHHGKPILESLVILEYIEETWRDNPIFPQHPHEKALARFWAKYIDDKVLAALQKFPSCKEEEEREKAIEEAQEILEPLEKELKDKKFFGGEKIGFVDIVGLVLARWIPATEEAGGFELLTSQRFPNLKTWSEEFVNHSVAKEVLPQKDALVAFLKNVAFNRKN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14701063 14703310 + Maker00012580 Lcy1g1498 623410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1498 252 CDD GST_N_Tau 35 110 - -
Lcy1g1498 252 SFLD Glutathione Transferase (cytosolic) 31 246 IPR040079 -
Lcy1g1498 252 Gene3D - 116 251 - -
Lcy1g1498 252 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 34 244 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lcy1g1498 252 SFLD Main.3: Omega- and Tau-like 31 246 IPR045073 -
Lcy1g1498 252 SUPERFAMILY GST C-terminal domain-like 108 245 IPR036282 -
Lcy1g1498 252 Gene3D Glutaredoxin 29 115 - -
Lcy1g1498 252 Coils Coil 150 170 - -
Lcy1g1498 252 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 33 114 IPR004045 -
Lcy1g1498 252 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 119 248 IPR010987 -
Lcy1g1498 252 SUPERFAMILY Thioredoxin-like 34 137 IPR036249 -
Lcy1g1498 252 Pfam Glutathione S-transferase, C-terminal domain 129 225 IPR004046 -
Lcy1g1498 252 CDD GST_C_Tau 120 244 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lcy1g1498 252 FunFam Glutathione S-transferase GSTU6 30 116 - -
Lcy1g1498 252 Pfam Glutathione S-transferase, N-terminal domain 34 108 IPR004045 -
Lcy1g1498 252 FunFam Tau class glutathione S-transferase 116 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1498 Lcy-Chr1:14701063 Lcy1g1517 Lcy-Chr1:14949582 8.29E-103 dispersed
Lcy1g1498 Lcy-Chr1:14701063 Lcy1g1499 Lcy-Chr1:14705411 3.19E-11 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1498 K00799 - csv:101215228 311.227