Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1498 | ATGTATGAATCCCGGCCGGAAAAAAGGGTGGTTCGGCCGGGATTTTCAACCTGTCCGGCCGAGATTGGACCGGAAGAAATTAAAGAAATGGCAGCTGAACAAGTGCAGGTCTTTGGTTTCCGGTCGGGCCCCTTCAGTCTGAGAGTGGAGTTGGCTCTCAGGCTCAAAGGCGTGGCTTACGAACACATTGAGGAAGATTTGCTGAACAACAAGAAGAGCGATTTGCTTCTGAAATACAACCCAATCTTCAAGAAGGTGCCTGTCCTCGTCCATCATGGCAAACCCATTTTAGAGTCTCTGGTCATCCTCGAATACATCGAAGAAACTTGGAGGGACAACCCCATCTTCCCCCAACATCCCCATGAGAAAGCTCTTGCGAGGTTTTGGGCTAAGTATATCGATGACAAGGTTCTGGCCGCATTACAGAAATTTCCTTCATGCAAAGAAGAAGAAGAGAGAGAGAAGGCTATAGAAGAAGCGCAGGAAATATTAGAACCACTTGAGAAAGAGTTAAAAGACAAGAAGTTCTTTGGAGGAGAAAAAATTGGATTTGTGGACATTGTCGGCCTCGTTTTGGCCCGCTGGATTCCTGCCACTGAAGAAGCTGGAGGGTTCGAGCTGCTGACAAGCCAGAGGTTCCCAAACCTAAAAACATGGAGTGAAGAGTTTGTGAATCACAGCGTGGCAAAGGAGGTTCTGCCTCAGAAAGATGCACTGGTTGCCTTTTTGAAAAACGTTGCGTTTAATCGAAAAAACTAG | 759 | 46.9 | MYESRPEKRVVRPGFSTCPAEIGPEEIKEMAAEQVQVFGFRSGPFSLRVELALRLKGVAYEHIEEDLLNNKKSDLLLKYNPIFKKVPVLVHHGKPILESLVILEYIEETWRDNPIFPQHPHEKALARFWAKYIDDKVLAALQKFPSCKEEEEREKAIEEAQEILEPLEKELKDKKFFGGEKIGFVDIVGLVLARWIPATEEAGGFELLTSQRFPNLKTWSEEFVNHSVAKEVLPQKDALVAFLKNVAFNRKN | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14701063 | 14703310 | + | Maker00012580 | Lcy1g1498 | 623410 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1498 | 252 | CDD | GST_N_Tau | 35 | 110 | - | - | |
Lcy1g1498 | 252 | SFLD | Glutathione Transferase (cytosolic) | 31 | 246 | IPR040079 | - | |
Lcy1g1498 | 252 | Gene3D | - | 116 | 251 | - | - | |
Lcy1g1498 | 252 | PANTHER | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | 34 | 244 | IPR045073 | GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER) | |
Lcy1g1498 | 252 | SFLD | Main.3: Omega- and Tau-like | 31 | 246 | IPR045073 | - | |
Lcy1g1498 | 252 | SUPERFAMILY | GST C-terminal domain-like | 108 | 245 | IPR036282 | - | |
Lcy1g1498 | 252 | Gene3D | Glutaredoxin | 29 | 115 | - | - | |
Lcy1g1498 | 252 | Coils | Coil | 150 | 170 | - | - | |
Lcy1g1498 | 252 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 33 | 114 | IPR004045 | - | |
Lcy1g1498 | 252 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 119 | 248 | IPR010987 | - | |
Lcy1g1498 | 252 | SUPERFAMILY | Thioredoxin-like | 34 | 137 | IPR036249 | - | |
Lcy1g1498 | 252 | Pfam | Glutathione S-transferase, C-terminal domain | 129 | 225 | IPR004046 | - | |
Lcy1g1498 | 252 | CDD | GST_C_Tau | 120 | 244 | IPR045074 | GO:0004364(InterPro)|GO:0006749(InterPro) | |
Lcy1g1498 | 252 | FunFam | Glutathione S-transferase GSTU6 | 30 | 116 | - | - | |
Lcy1g1498 | 252 | Pfam | Glutathione S-transferase, N-terminal domain | 34 | 108 | IPR004045 | - | |
Lcy1g1498 | 252 | FunFam | Tau class glutathione S-transferase | 116 | 251 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1498 | Lcy-Chr1:14701063 | Lcy1g1517 | Lcy-Chr1:14949582 | 8.29E-103 | dispersed | |
Lcy1g1498 | Lcy-Chr1:14701063 | Lcy1g1499 | Lcy-Chr1:14705411 | 3.19E-11 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g1498 | K00799 | - | csv:101215228 | 311.227 |