Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1516 ATGGCGGAAGAACTGCAAGTGTTGGGTGCATGGATGAGTCCCTTCAGTCGCAGAGTGGAGTTGGGTTTGAAACTCAAAGGCGTAAAATATGAATATATTGAGGAAGACTTGAAGAAGAAGAGTGATTTGCTTGTGAAATACAACCCACTTCACAAGAAGGTGCCTGTTCTTCTTCACTGTGGAAAACCCATTGCAGAGTCGATCATCGTCCTCGAATACATTGATGAAAACTGGAAAGCCAACCCCATGCTGCCTCAGGATCTCCATGAAAGAGCTCGAGCAAGGTTCTGGGCCAAGTATATCGATGACAAGGTTCTGCCTGCGGTACTAAAAGCTGCTCGAAGCAAAGGAGAAGAGAGAGAGAAGGCTGTAGCAGAAGCAGGGGAGACATTAGAAGCACTTGAGAATGAGCTGAAAAGCAGCAAGTTTTTTGGAGGAGAAAGAATTGGGTTTGTGGACATTGTTGCGACTCTAGTAGCCTACTGGGTTCCTGCCATTGAAGAAGGTTTTGGATTTGAGCTGCTCACCAGTAACAACTTTCCAAACTTAAGCAAATGGACTGAGGAGCTTGTGAACCACAGCGTCGTGAAGGAGATTCTGCCTCCGAAGCCTAAGCTTGTGGCCTATTTGCAAGCTGTTCTTCCAAGAAACTAG 654 46.18 MAEELQVLGAWMSPFSRRVELGLKLKGVKYEYIEEDLKKKSDLLVKYNPLHKKVPVLLHCGKPIAESIIVLEYIDENWKANPMLPQDLHERARARFWAKYIDDKVLPAVLKAARSKGEEREKAVAEAGETLEALENELKSSKFFGGERIGFVDIVATLVAYWVPAIEEGFGFELLTSNNFPNLSKWTEELVNHSVVKEILPPKPKLVAYLQAVLPRN 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14943930 14945682 - Maker00012937 Lcy1g1516 623428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1516 217 CDD GST_C_Tau 89 212 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lcy1g1516 217 Pfam Glutathione S-transferase, C-terminal domain 96 192 IPR004046 -
Lcy1g1516 217 Gene3D Glutaredoxin 1 83 - -
Lcy1g1516 217 Gene3D - 84 216 - -
Lcy1g1516 217 FunFam Tau class glutathione S-transferase 84 216 - -
Lcy1g1516 217 SFLD Main (cytGST) 2 212 - -
Lcy1g1516 217 SUPERFAMILY Thioredoxin-like 6 105 IPR036249 -
Lcy1g1516 217 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 210 IPR010987 -
Lcy1g1516 217 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lcy1g1516 217 Coils Coil 117 137 - -
Lcy1g1516 217 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Lcy1g1516 217 SUPERFAMILY GST C-terminal domain-like 76 214 IPR036282 -
Lcy1g1516 217 SFLD Main.3: Omega- and Tau-like 2 212 IPR045073 -
Lcy1g1516 217 CDD GST_N_Tau 5 78 - -
Lcy1g1516 217 FunFam Tau class glutathione S-transferase 1 86 - -
Lcy1g1516 217 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1516 Lcy-Chr1:14943930 Lcy2g0402 Lcy-Chr2:3373657 2.90E-65 dispersed
Lcy1g1515 Lcy-Chr1:14925634 Lcy1g1516 Lcy-Chr1:14943930 7.20E-92 tandem
Lcy1g1516 Lcy-Chr1:14943930 Lcy1g1517 Lcy-Chr1:14949582 5.03E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1516 K00799 - csv:105435246 293.893