Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1517 ATGGCCGAACAATTGCAGGTCTTTGGTGCTTGGACAAGTCCCTTCAGTCGCAGAGTGGAGCTGGCTCTCAGACTCAAAGGCGTCGAATACCAATACGTCGAGGAAGATTTGCCAAACAACAAGAGCGATTTGCTTCTGAAATACAACCCAATTCACAAGAAAGTGCCTGTGCTCGTCCACCATGGCAAACCCATTGCAGAGTCTCTCGTCATCCTCGAATACATCGATGAAAACTGGAAAGCCAACCCCATCTTGCCGCAACATCCCCATCAAAGAGCTCTCGCAAGGTTCTGGGCTAAGTTCATCGACGACAAGGTTGTGTCTGCGGTAGTGAAGGCTGCTGGAAGCGAAGGGGAAGAGAGAGAGAAGGCTGTAGAAGAAGCAGGGGAGACATTAGAAGCACTTGAGAATGAGCTGAAGAACGACAAGTTCTTCGGAGGAGAGAGAATTGGGTTTGTGGATATTGTCGGCATTGTCGTGGCCCAATGGGTTCCTGCCATTGAAGAAAGTTTTGGGTTTGAGGTGTTGAGAAGTGACAAGTTTCCAAACTTATGCAGATGGAGTGAAGAGCTTGTGAACCATGGCGTGGTGAAGGAGATTCTGCCTCCAAGACATGAGATTGTTGCCTTTATCCAAGCTAATTGGAAATTTCAAAAGTAG 660 47.88 MAEQLQVFGAWTSPFSRRVELALRLKGVEYQYVEEDLPNNKSDLLLKYNPIHKKVPVLVHHGKPIAESLVILEYIDENWKANPILPQHPHQRALARFWAKFIDDKVVSAVVKAAGSEGEEREKAVEEAGETLEALENELKNDKFFGGERIGFVDIVGIVVAQWVPAIEESFGFEVLRSDKFPNLCRWSEELVNHGVVKEILPPRHEIVAFIQANWKFQK 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14949582 14950552 - Maker00013096 Lcy1g1517 623429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1517 219 CDD GST_N_Tau 5 79 - -
Lcy1g1517 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Lcy1g1517 219 SFLD Main (cytGST) 2 213 - -
Lcy1g1517 219 Gene3D - 85 219 - -
Lcy1g1517 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Lcy1g1517 219 Pfam Glutathione S-transferase, C-terminal domain 102 193 IPR004046 -
Lcy1g1517 219 Coils Coil 118 138 - -
Lcy1g1517 219 CDD GST_C_Tau 89 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lcy1g1517 219 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Lcy1g1517 219 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
Lcy1g1517 219 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Lcy1g1517 219 Gene3D Glutaredoxin 1 84 - -
Lcy1g1517 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 212 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lcy1g1517 219 FunFam Tau class glutathione S-transferase 85 218 - -
Lcy1g1517 219 SFLD Main.3: Omega- and Tau-like 2 213 IPR045073 -
Lcy1g1517 219 FunFam Glutathione S-transferase U10 1 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1865 Lcy-Chr11:42432851 Lcy1g1517 Lcy-Chr1:14949582 1.93E-74 dispersed
Lcy1g1495 Lcy-Chr1:14672709 Lcy1g1517 Lcy-Chr1:14949582 1.22E-105 dispersed
Lcy1g1496 Lcy-Chr1:14683740 Lcy1g1517 Lcy-Chr1:14949582 4.56E-111 dispersed
Lcy1g1498 Lcy-Chr1:14701063 Lcy1g1517 Lcy-Chr1:14949582 8.29E-103 dispersed
Lcy1g1501 Lcy-Chr1:14719638 Lcy1g1517 Lcy-Chr1:14949582 1.67E-37 dispersed
Lcy1g1503 Lcy-Chr1:14738796 Lcy1g1517 Lcy-Chr1:14949582 2.32E-65 dispersed
Lcy1g1515 Lcy-Chr1:14925634 Lcy1g1517 Lcy-Chr1:14949582 4.43E-91 dispersed
Lcy1g1517 Lcy-Chr1:14949582 Lcy2g0402 Lcy-Chr2:3373657 8.96E-70 dispersed
Lcy1g1516 Lcy-Chr1:14943930 Lcy1g1517 Lcy-Chr1:14949582 5.03E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1517 K00799 - csv:105435246 322.398