Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1521 | ATGGCGGCTTTGGAGACTGCCGGAGTTGATTTGGAGGAAGGTGACCGTGGCGGCGGCGGCGGCGGTGGTCGGCGGGCGGAGGCTGGAAGTGGGGTTGGTGAAGTGAAGGTGCATTTGGAAAGGGATTGTAGGATTTGCCATTTGGGTTTGGAAAGCAATAGCAGTGAGTGTGGGATTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTGTTGTACAAAATGTCGTTGGAGGACATGAACTAGAACCAATGGAGCAACTCCATGAGTCGAACAACGGGACGGTATCGACAGCCACAGTTGCAGCGTCGGTGGCTGCCGCTCCCGGTGGTGGCCGGAGCTTTTGGCAGGTTCACCGGGTCCTGAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTGTTTCATTTCAATGTGCCATCATAG | 513 | 51.07 | MAALETAGVDLEEGDRGGGGGGGRRAEAGSGVGEVKVHLERDCRICHLGLESNSSECGIAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVQNVVGGHELEPMEQLHESNNGTVSTATVAASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15002604 | 15004427 | - | Maker00012554 | Lcy1g1521 | 623433 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1521 | 170 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 35 | 101 | IPR011016 | GO:0008270(InterPro) | |
Lcy1g1521 | 170 | PANTHER | ZINC FINGER, RING-CH-TYPE | 33 | 169 | - | - | |
Lcy1g1521 | 170 | Pfam | RING-variant domain | 43 | 94 | IPR011016 | GO:0008270(InterPro) | |
Lcy1g1521 | 170 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 103 | IPR013083 | - | |
Lcy1g1521 | 170 | SUPERFAMILY | RING/U-box | 40 | 98 | - | - | |
Lcy1g1521 | 170 | SMART | ringv_2 | 42 | 95 | IPR011016 | GO:0008270(InterPro) | |
Lcy1g1521 | 170 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0259 | Lcy-Chr1:2338591 | Lcy1g1521 | Lcy-Chr1:15002604 | 2.58E-20 | dispersed | |
Lcy1g1521 | Lcy-Chr1:15002604 | Lcy9g1461 | Lcy-Chr9:39639486 | 9.16E-13 | dispersed | |
Lcy1g1521 | Lcy-Chr1:15002604 | Lcy10g2219 | Lcy-Chr10:46072880 | 1.94E-60 | wgd | |
Lcy1g1521 | Lcy-Chr1:15002604 | Lcy11g0131 | Lcy-Chr11:1417052 | 6.32E-39 | wgd | |
Lcy1g1521 | Lcy-Chr1:15002604 | Lcy5g0151 | Lcy-Chr5:1548651 | 1.00E-70 | wgd |
Pathway information
