Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1521 ATGGCGGCTTTGGAGACTGCCGGAGTTGATTTGGAGGAAGGTGACCGTGGCGGCGGCGGCGGCGGTGGTCGGCGGGCGGAGGCTGGAAGTGGGGTTGGTGAAGTGAAGGTGCATTTGGAAAGGGATTGTAGGATTTGCCATTTGGGTTTGGAAAGCAATAGCAGTGAGTGTGGGATTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTGTTGTACAAAATGTCGTTGGAGGACATGAACTAGAACCAATGGAGCAACTCCATGAGTCGAACAACGGGACGGTATCGACAGCCACAGTTGCAGCGTCGGTGGCTGCCGCTCCCGGTGGTGGCCGGAGCTTTTGGCAGGTTCACCGGGTCCTGAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTGTTTCATTTCAATGTGCCATCATAG 513 51.07 MAALETAGVDLEEGDRGGGGGGGRRAEAGSGVGEVKVHLERDCRICHLGLESNSSECGIAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVQNVVGGHELEPMEQLHESNNGTVSTATVAASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 170
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 15002604 15004427 - Maker00012554 Lcy1g1521 623433
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1521 170 ProSiteProfiles Zinc finger RING-CH-type profile. 35 101 IPR011016 GO:0008270(InterPro)
Lcy1g1521 170 PANTHER ZINC FINGER, RING-CH-TYPE 33 169 - -
Lcy1g1521 170 Pfam RING-variant domain 43 94 IPR011016 GO:0008270(InterPro)
Lcy1g1521 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 103 IPR013083 -
Lcy1g1521 170 SUPERFAMILY RING/U-box 40 98 - -
Lcy1g1521 170 SMART ringv_2 42 95 IPR011016 GO:0008270(InterPro)
Lcy1g1521 170 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0259 Lcy-Chr1:2338591 Lcy1g1521 Lcy-Chr1:15002604 2.58E-20 dispersed
Lcy1g1521 Lcy-Chr1:15002604 Lcy9g1461 Lcy-Chr9:39639486 9.16E-13 dispersed
Lcy1g1521 Lcy-Chr1:15002604 Lcy10g2219 Lcy-Chr10:46072880 1.94E-60 wgd
Lcy1g1521 Lcy-Chr1:15002604 Lcy11g0131 Lcy-Chr11:1417052 6.32E-39 wgd
Lcy1g1521 Lcy-Chr1:15002604 Lcy5g0151 Lcy-Chr5:1548651 1.00E-70 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1521 - - - 0.0