Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1532 ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACATATAGAGTCTGCTGTCAGTATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAAAGAGATCGCTCTATTGAGAGACCGGTGCATGAATACCAACAACCTACACGGGATCAGTTTTACCCTGCTAAAAACCAAAAAACTGATAGAAGCAGGCTTCCCCCAGGTTGGTTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGCATGATTCCTTCCAAGGTTCCTCTAGGTGAATCCTTCAATGATTGTATAACACCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGGAAACTCGGTTTGGTGATTGATTTGTCAAATTCTTACCGTTATTATACAACAACAGAATTGAATAAAGAAGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATATGTTCGTTTACGAGGTCATTCAGTTCCTTTCTCGTCAGAAACACTCAAAGAAGTACATTCTTGTCCATTGCACGCATGGCCATAATCGTACTGGATATATGATCATAAATTATCTTGTGCGTGCATTATCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCTGATGCACGCCCTCCTGGAATTTACAAGCCAGACTATATTGATGCATTATATGCCTTTTATCATGAAAGAAAACCTGAAGTGGTTGTTTGCCCACCAACGCCTGAGTGGAAGAGATCTTCAGATCTGGATCTTAATGGTGAAGCAGTTCCGGATGATGATGATGATGGAGGTCCTGCTGCTCCTTTGAATATTGCACATGGAATACACCCAGGAGTCCACTTTGTTCCATTCCTTTTTGATAATTGTGGCATTAGGCTCCATCCTACCCATCCATACACTTGCACTCAGTATTCTAGTTCATGGAGAATATCAAAATTAAGACATGGTGCATTTCTTTTCCATGTCCCAATCGCTCGACCGGAAAATCATGATGATGGTGCTCAAGTGATGACAAATGATGATGTATTGGGAGATGAGATACCTGAGGACCAGGAACGTGCTTTGAAACATTTTTGCTATCAAATGCTTAAATTGAATGCTGGAGGTATTGGCAATTTGAGAGTCCACAACAAGGCCTTGCTGCCAAATGGCTTTGACATTTTCATCTTGGGTCTAATATCTTGTGGCATAAGGTCATTGTGGGCAAGTATGGGTCGTCCCCTCACGAATCGAACTCAAGTGGGGGTCAAGGGACTTTCAGAAACCCTTGGAGAGTTGCGATGTGGCTTATGCCGTCTGGAGTCAGCTCTTTGTATAGTCGATCTTGTTTTGGCCAGACAGAGGAATTGTAGAGAGATAATCGAGGAGTCCTTCTCCCTTTCACAAGAGAGGAAAGCAAGAGCAAATTTGCAATTTCCAGGGTCACATCCAGTGTCTCTTAACAGGAATTTGAAAGATTTGGAAGCGGATGAATGGGTTGCTTTGAGCATGGATCTAGACCCCATTTCCTTATCTCATTCTGAAGACAAATGGAGATGGCCCCTCAACCAAAATGGTTATTTTTCCACTAAATCACTCCTCTCTGACATGACGGGAAATATTAGTCTCATTGAGCCATCTTTGGCAAAGATTATATGGAGAGACAACTACCCAAAGAAGATTAAATTCTTTCTCTGGGAACTAGCCCACAAAGCCATCAACACTAAGGAGGTTCTTCAGAGATGCATGCCTTACATGTCCCTTTCCCCTGGATGGTGTTATTTATGCAAATCTAGTGATGAAACGCAGGATCACATTTTTGCTACTTGCCCCTTTGCTTGGAAATTCTGGAGTAGGATCACAAAGTCTTTTGAGTGGTACATGTCTCTTCCGGGTAATATGGAGGATATCCTTGCCTCTGTTATGTTGGGACATCCTTTCATCAATATCAAAGGCCTTCTATGGATGAACATTGCTAGAGCTTTCTTTTGGGTCTTATGGAAAGAAAGAAATCGAAGAGTTTTCCTAGGAATAGATCTCTCTTTTGATGCTTTTTTTGACATTACCACCTTTCTCTGTAGTCTTCTTTGCTTCTGTGCTATGGTGGACAGCCTCGCACTTGGTCTCTTTTGA 2205 42.36 MIVSMDLNASPVPEEDEETFERHEEVYSAPEEHIESAVSIARREREERKRRLKRDRSIERPVHEYQQPTRDQFYPAKNQKTDRSRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPGKRYSFKQVIHQQRVWGRKLGLVIDLSNSYRYYTTTELNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVIQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFSDARPPGIYKPDYIDALYAFYHERKPEVVVCPPTPEWKRSSDLDLNGEAVPDDDDDGGPAAPLNIAHGIHPGVHFVPFLFDNCGIRLHPTHPYTCTQYSSSWRISKLRHGAFLFHVPIARPENHDDGAQVMTNDDVLGDEIPEDQERALKHFCYQMLKLNAGGIGNLRVHNKALLPNGFDIFILGLISCGIRSLWASMGRPLTNRTQVGVKGLSETLGELRCGLCRLESALCIVDLVLARQRNCREIIEESFSLSQERKARANLQFPGSHPVSLNRNLKDLEADEWVALSMDLDPISLSHSEDKWRWPLNQNGYFSTKSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFLWELAHKAINTKEVLQRCMPYMSLSPGWCYLCKSSDETQDHIFATCPFAWKFWSRITKSFEWYMSLPGNMEDILASVMLGHPFINIKGLLWMNIARAFFWVLWKERNRRVFLGIDLSFDAFFDITTFLCSLLCFCAMVDSLALGLF 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15097428 15114315 + Maker00013367 Lcy1g1532 623444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1532 734 PANTHER MRNA-CAPPING ENZYME 78 518 IPR051029 GO:0004484(PANTHER)|GO:0006370(PANTHER)
Lcy1g1532 734 CDD RNA_5'-triphosphatase 89 255 - -
Lcy1g1532 734 MobiDBLite consensus disorder prediction 277 299 - -
Lcy1g1532 734 Pfam zinc-binding in reverse transcriptase 552 641 IPR026960 -
Lcy1g1532 734 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 252 IPR000387 GO:0016311(InterPro)
Lcy1g1532 734 MobiDBLite consensus disorder prediction 1 83 - -
Lcy1g1532 734 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 275 IPR029021 -
Lcy1g1532 734 SMART dsp_5 120 260 IPR020422 GO:0006470(InterPro)
Lcy1g1532 734 Pfam Dual specificity phosphatase, catalytic domain 138 258 IPR000340 GO:0016311(InterPro)
Lcy1g1532 734 FunFam mRNA capping enzyme family protein 82 296 - -
Lcy1g1532 734 MobiDBLite consensus disorder prediction 22 66 - -
Lcy1g1532 734 ProSitePatterns Tyrosine specific protein phosphatases active site. 205 215 IPR016130 GO:0016311(InterPro)
Lcy1g1532 734 Gene3D Protein tyrosine phosphatase superfamily 82 294 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1532 K13917 - - csv:101209960 556.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1532 Lcy-Chr1:15097428 Lcy6g1627 Lcy-Chr6:29573455 3.75E-91 dispersed
Lcy1g1532 Lcy-Chr1:15097428 Lcy9g0829 Lcy-Chr9:27585147 7.27E-87 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy9g0745 . 3 101 Protein tyrosine phosphatase (PTP) family AT1G71860 74.7 2.1e-41 167.2
Lcy2g0017 . 132 859 Protein tyrosine phosphatase (PTP) family AT5G23720 63.0 5.3e-244 841.6
Lcy2g0016 . 370 542 Protein tyrosine phosphatase (PTP) family AT5G23720 72.6 4.4e-65 247.3
Lcy13g0243 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 8.6e-44 174.1
Lcy3g0013 . 87 226 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.4e-41 166.0
Lcy3g0025 . 378 513 Protein tyrosine phosphatase (PTP) family AT3G06110 58.8 1.5e-40 163.3
Lcy4g0737 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 4.7e-72 268.1
Lcy7g1054 . 34 273 Protein tyrosine phosphatase (PTP) family AT3G10940 68.1 1.9e-99 359.8
Lcy10g0212 . 124 628 Protein tyrosine phosphatase (PTP) family AT3G01510 64.8 3.8e-195 678.3
Lcy4g0731 . 33 242 Protein tyrosine phosphatase (PTP) family AT2G32960 63.1 4.7e-73 271.9
Lcy4g2209 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.2e-79 294.3
Lcy4g2209 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.0e-45 180.6
Lcy4g0731 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.7e-70 263.1
Lcy2g1461 . 8 228 Protein tyrosine phosphatase (PTP) family AT3G02800 60.2 3.3e-74 275.4
Lcy4g0731 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 6.8e-51 198.0
Lcy7g0844 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.3e-62 238.8
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy4g0225 . 104 685 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 1.8e-216 749.6
Lcy1g0966 . 31 634 Protein tyrosine phosphatase (PTP) family AT3G19420 60.1 2.9e-198 689.1
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy8g1980 . 64 269 Protein tyrosine phosphatase (PTP) family AT3G44620 59.0 3.9e-67 252.3
Lcy6g2209 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 2.3e-111 399.4
Lcy1g1532 . 1 402 Protein tyrosine phosphatase (PTP) family AT3G09100 57.4 1.9e-121 434.1
Lcy1g1532 . 5 402 Protein tyrosine phosphatase (PTP) family AT5G01290 53.9 3.8e-111 399.8
Lcy1g1532 . 86 294 Protein tyrosine phosphatase (PTP) family AT5G28210 64.9 4.3e-72 270.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33