Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1532 ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACATATAGAGTCTGCTGTCAGTATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAAAGAGATCGCTCTATTGAGAGACCGGTGCATGAATACCAACAACCTACACGGGATCAGTTTTACCCTGCTAAAAACCAAAAAACTGATAGAAGCAGGCTTCCCCCAGGTTGGTTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGCATGATTCCTTCCAAGGTTCCTCTAGGTGAATCCTTCAATGATTGTATAACACCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGGAAACTCGGTTTGGTGATTGATTTGTCAAATTCTTACCGTTATTATACAACAACAGAATTGAATAAAGAAGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATATGTTCGTTTACGAGGTCATTCAGTTCCTTTCTCGTCAGAAACACTCAAAGAAGTACATTCTTGTCCATTGCACGCATGGCCATAATCGTACTGGATATATGATCATAAATTATCTTGTGCGTGCATTATCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCTGATGCACGCCCTCCTGGAATTTACAAGCCAGACTATATTGATGCATTATATGCCTTTTATCATGAAAGAAAACCTGAAGTGGTTGTTTGCCCACCAACGCCTGAGTGGAAGAGATCTTCAGATCTGGATCTTAATGGTGAAGCAGTTCCGGATGATGATGATGATGGAGGTCCTGCTGCTCCTTTGAATATTGCACATGGAATACACCCAGGAGTCCACTTTGTTCCATTCCTTTTTGATAATTGTGGCATTAGGCTCCATCCTACCCATCCATACACTTGCACTCAGTATTCTAGTTCATGGAGAATATCAAAATTAAGACATGGTGCATTTCTTTTCCATGTCCCAATCGCTCGACCGGAAAATCATGATGATGGTGCTCAAGTGATGACAAATGATGATGTATTGGGAGATGAGATACCTGAGGACCAGGAACGTGCTTTGAAACATTTTTGCTATCAAATGCTTAAATTGAATGCTGGAGGTATTGGCAATTTGAGAGTCCACAACAAGGCCTTGCTGCCAAATGGCTTTGACATTTTCATCTTGGGTCTAATATCTTGTGGCATAAGGTCATTGTGGGCAAGTATGGGTCGTCCCCTCACGAATCGAACTCAAGTGGGGGTCAAGGGACTTTCAGAAACCCTTGGAGAGTTGCGATGTGGCTTATGCCGTCTGGAGTCAGCTCTTTGTATAGTCGATCTTGTTTTGGCCAGACAGAGGAATTGTAGAGAGATAATCGAGGAGTCCTTCTCCCTTTCACAAGAGAGGAAAGCAAGAGCAAATTTGCAATTTCCAGGGTCACATCCAGTGTCTCTTAACAGGAATTTGAAAGATTTGGAAGCGGATGAATGGGTTGCTTTGAGCATGGATCTAGACCCCATTTCCTTATCTCATTCTGAAGACAAATGGAGATGGCCCCTCAACCAAAATGGTTATTTTTCCACTAAATCACTCCTCTCTGACATGACGGGAAATATTAGTCTCATTGAGCCATCTTTGGCAAAGATTATATGGAGAGACAACTACCCAAAGAAGATTAAATTCTTTCTCTGGGAACTAGCCCACAAAGCCATCAACACTAAGGAGGTTCTTCAGAGATGCATGCCTTACATGTCCCTTTCCCCTGGATGGTGTTATTTATGCAAATCTAGTGATGAAACGCAGGATCACATTTTTGCTACTTGCCCCTTTGCTTGGAAATTCTGGAGTAGGATCACAAAGTCTTTTGAGTGGTACATGTCTCTTCCGGGTAATATGGAGGATATCCTTGCCTCTGTTATGTTGGGACATCCTTTCATCAATATCAAAGGCCTTCTATGGATGAACATTGCTAGAGCTTTCTTTTGGGTCTTATGGAAAGAAAGAAATCGAAGAGTTTTCCTAGGAATAGATCTCTCTTTTGATGCTTTTTTTGACATTACCACCTTTCTCTGTAGTCTTCTTTGCTTCTGTGCTATGGTGGACAGCCTCGCACTTGGTCTCTTTTGA 2205 42.36 MIVSMDLNASPVPEEDEETFERHEEVYSAPEEHIESAVSIARREREERKRRLKRDRSIERPVHEYQQPTRDQFYPAKNQKTDRSRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPGKRYSFKQVIHQQRVWGRKLGLVIDLSNSYRYYTTTELNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVIQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFSDARPPGIYKPDYIDALYAFYHERKPEVVVCPPTPEWKRSSDLDLNGEAVPDDDDDGGPAAPLNIAHGIHPGVHFVPFLFDNCGIRLHPTHPYTCTQYSSSWRISKLRHGAFLFHVPIARPENHDDGAQVMTNDDVLGDEIPEDQERALKHFCYQMLKLNAGGIGNLRVHNKALLPNGFDIFILGLISCGIRSLWASMGRPLTNRTQVGVKGLSETLGELRCGLCRLESALCIVDLVLARQRNCREIIEESFSLSQERKARANLQFPGSHPVSLNRNLKDLEADEWVALSMDLDPISLSHSEDKWRWPLNQNGYFSTKSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFLWELAHKAINTKEVLQRCMPYMSLSPGWCYLCKSSDETQDHIFATCPFAWKFWSRITKSFEWYMSLPGNMEDILASVMLGHPFINIKGLLWMNIARAFFWVLWKERNRRVFLGIDLSFDAFFDITTFLCSLLCFCAMVDSLALGLF 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15097428 15114315 + Maker00013367 Lcy1g1532 623444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1532 734 PANTHER MRNA-CAPPING ENZYME 78 518 IPR051029 GO:0004484(PANTHER)|GO:0006370(PANTHER)
Lcy1g1532 734 CDD RNA_5'-triphosphatase 89 255 - -
Lcy1g1532 734 MobiDBLite consensus disorder prediction 277 299 - -
Lcy1g1532 734 Pfam zinc-binding in reverse transcriptase 552 641 IPR026960 -
Lcy1g1532 734 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 252 IPR000387 GO:0016311(InterPro)
Lcy1g1532 734 MobiDBLite consensus disorder prediction 1 83 - -
Lcy1g1532 734 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 275 IPR029021 -
Lcy1g1532 734 SMART dsp_5 120 260 IPR020422 GO:0006470(InterPro)
Lcy1g1532 734 Pfam Dual specificity phosphatase, catalytic domain 138 258 IPR000340 GO:0016311(InterPro)
Lcy1g1532 734 FunFam mRNA capping enzyme family protein 82 296 - -
Lcy1g1532 734 MobiDBLite consensus disorder prediction 22 66 - -
Lcy1g1532 734 ProSitePatterns Tyrosine specific protein phosphatases active site. 205 215 IPR016130 GO:0016311(InterPro)
Lcy1g1532 734 Gene3D Protein tyrosine phosphatase superfamily 82 294 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1532 Lcy-Chr1:15097428 Lcy6g1627 Lcy-Chr6:29573455 3.75E-91 dispersed
Lcy1g1532 Lcy-Chr1:15097428 Lcy9g0829 Lcy-Chr9:27585147 7.27E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1532 K13917 - csv:101209960 556.984