Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1546 ATGGCCGCCACCTCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCGCCGACGTGCGGCCGAGTTCCGGGCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAGAGCCCGGCGAAGAAATCGCCGTCGTCGAAGCAGATATCAGACCGGCCGCTGTGGTTCCCCGGAGCGAAGGCGCCGGAATGGCTGGACGGAAGCCTGGTCGGCGACTACGGGTTCGATCCGTTCGGGTTGGGGAAACCGGCGGAGTATTTGCAGTACGATCTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGAGATTCGAGAGCTCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCCATGTTGGCCACACTCGGTGCTCTCTCTGTTGAATGGCTCACTGGCGTCACTTGGCAAGACGCCGGAAAGGTAGAATTAGTGGAAGGTTCATCCTACCTTGGGCAGCCCCTTCCCTTCTCCATCACCACATTGATCTGGATCGAAGTTCTCGTGATCGGATACATCGAGTTTCAAAGGAACTCCGAGCTCGACCCCGAGAAGAGATTGTATCCTGGAGGCAAGTATTTTGACCCCTTGGGCTTGGCCGAGGATCCCGAAAAGAAAGCCATCCTACAATTGGCTGAGATCAAGCATGCTCGCCTTGCCATGGTTGCCTTCCTTGGCTTCGCTGTTCAAGCTGCTGTCACTGGCAAAGGCCCGCTCAACAACTGGGCAACCCATCTGAGTGACCCACTCCACACCACCATTATTGACACATTCTCCTCTTCTTAA 861 55.98 MAATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15313044 15315468 + Maker00012823 Lcy1g1546 623458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1546 286 Pfam Chlorophyll A-B binding protein 60 256 IPR022796 -
Lcy1g1546 286 FunFam Chlorophyll a-b binding protein, chloroplastic 108 285 - -
Lcy1g1546 286 Gene3D Chlorophyll a/b binding protein domain 54 286 - -
Lcy1g1546 286 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 280 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lcy1g1546 286 MobiDBLite consensus disorder prediction 20 51 - -
Lcy1g1546 286 SUPERFAMILY Chlorophyll a-b binding protein 47 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1546 Lcy-Chr1:15313044 Lcy5g0115 Lcy-Chr5:1175515 1.98E-180 dispersed
Lcy1g1546 Lcy-Chr1:15313044 Lcy6g1248 Lcy-Chr6:15037695 2.42E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1546 K08915 - csv:101208740 547.354