Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1557 ATGGCTTCCCAAACCGAGCCTTGGCTACTGGAAAACGGAACCGTCAAGCGCTTGACCAAAGACAATCGACAAGGCCATGGCCGGAGCCGAACCGCCCACAACATGTCCTCCTCTTCCCTCCGCAAAAAGTCCGATTTAACCCTCGTCTCCAAAATCCCCATCGGCTGCCTCAGGAGCTTCTTCATCAATCTCCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCCGCGATTCCTCTCGCTATCGTCGCTGACTGTTTCGGCTTTGCAAGAGTGAGAAACCAAAACCCTCGTCCCGTGAAACTACATGTCGTTTTTCTGCAAATCGCTTATTTCACTGGTCCAACAGTTGGGGGACTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTTACACGAGGAAAGATAGACGTTGTCAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTCTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGATAGGAGGCAAGCCGATGTCAACTCACTGATGCTGATGCTGTCATTACTGTGCCACTTGTTGCCGTTATTATTTGGCTACGCCGCCTCCTCCGCCACCACCGCGGCCACCTCCACCCTCCATCTGTCCAGAGCCAGCAGCATCGTAATGCTCTCCGCTTACATTGCTTACCTGGTCTTCCAACTCTGGACTCACCGGCAATTATTTGAAGCCGAGGATTCTGATCAAGACGACGACGTTCCCGGAGAAGAGGCAGTGATTGGATTCTGGAGTGCATTTGCATGGCTTGTAGGAATGACACTCCTCATTGCTTTGCTGTCCGAATACGTTGTGAACACAATTGAGGAAGCATCAACTACTTGGGGTCTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCCATAGTCGGAAATGCGGCCGAACACGCAGGAGCTATCATATTTGCTTTCAAGAATAAGTTGGACATTTCTTTGGGGGTTGCTTTGGGGTCTGCAACACAAATTGCACTCTTTGTGATTCCACTGTGTGTGATCGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAATCTCATGGAAACGGGGTCGCTTGGATTGGCCATTATTGCCACAGCCTTCACTTTGCAAGATGGAACCTCTCACTACATTAAAGGCCTTGTTCTTCTTCTATGCTACATTATCATTGCTGCTTGCTTCTTTGTCTCCAAGACACTAGAAGATGATAACCATGCCCCCAACTTGACAATCCAATCATCAAACCAAGCAATCTTCAGAGCTTAA 1332 47.67 MASQTEPWLLENGTVKRLTKDNRQGHGRSRTAHNMSSSSLRKKSDLTLVSKIPIGCLRSFFINLQEVILGTKLSILFPAIPLAIVADCFGFARVRNQNPRPVKLHVVFLQIAYFTGPTVGGLLNATCGNATELIIAILALTRGKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAASSATTAATSTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEDSDQDDDVPGEEAVIGFWSAFAWLVGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTLEDDNHAPNLTIQSSNQAIFRA 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15454261 15459809 - Maker00012680 Lcy1g1557 623469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1557 443 Pfam Sodium/calcium exchanger protein 274 417 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1557 443 Pfam Sodium/calcium exchanger protein 114 245 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1557 443 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 420 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Lcy1g1557 443 MobiDBLite consensus disorder prediction 19 38 - -
Lcy1g1557 443 NCBIfam calcium/proton exchanger 110 417 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Lcy1g1557 443 FunFam Vacuolar cation/proton exchanger 262 418 - -
Lcy1g1557 443 Gene3D - 117 418 IPR044880 -
Lcy1g1557 443 FunFam Vacuolar cation/proton exchanger 117 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1557 Lcy-Chr1:15454261 Lcy8g1337 Lcy-Chr8:40122536 5.35E-99 dispersed
Lcy1g1557 Lcy-Chr1:15454261 Lcy5g0112 Lcy-Chr5:1155959 6.41E-187 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1557 K07300 - csv:101213857 710.679