Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1585 AATTTCACTCTCTGCAACTTTCAAACCATGGCTACAAGCGTCTCCCACTCTCCCGATTTCCGCCCCGAAATCTCAGTTTCACCGCCGACCCACGACGGCCTTTTCTTCTGGCAGTTCATGATCGCCGGATCAATTGCAGGGTCCGTCGAGCACATGGCCATGTTTCCAGTGGACACTCTCAAGACCCGAATACAAGCCCTCGGCGGATCATCTACAGTCCGACAAGCACTCGGGTCGATTCTGAAAGTGGAAGGTCCAGCCGGACTCTACCGTGGAATCGGAGCAATGGGTCTCGGCGCAGGGCCTGCACACGCCGTATACTTCTCGGTATACGAATTCTGCAAAGAGGGGTTTTCGATTGGAAATCCGAACAACCCATTAGGGCACGCCATTTCTGGAGTGTGTGCGACGGTGGCGAGCGACGCCGTGATAACGCCGATGGATGTGGTGAAACAGAGGCTGCAGTTGGAGAGCAGTCCTTATAAGGGAGTGGGGGACTGTGTGAGGAGGGTTTTGGTTGAGGAAGGAATTGGGGCGCTCTATGCTTCTTATCGGACCACGGTTTTGATGAATGCGCCGTACACGGCTGTCCATTTTGCCACTTATGAAGCTGCGAAAAGGGGCTTGAAGGAAGTCTCGCCGGGAAGTGACGACGATGAGGGGTTGGTTGTTCATGCTACGGCTGGTGCGGCAGCTGGGTCTATTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAGTGCCAGGGAGTGTGTGGGTGCGACAGATTTTCAAGCAGTTCGGTAGGGTACGTACTTGGGCATGTGGTGAAGAAGGATGGGTACAATGGCCTGATGAGAGGATGGCTTCCAAGGATGCTGTTCCATGCGCCTGCTGCTGCAATTTGCTGGTCCACTTACGAAGCTTCAAAAACCTTCTTTCAACAGCTCCACCACGACAACAACAATTAG 963 53.69 NFTLCNFQTMATSVSHSPDFRPEISVSPPTHDGLFFWQFMIAGSIAGSVEHMAMFPVDTLKTRIQALGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFCKEGFSIGNPNNPLGHAISGVCATVASDAVITPMDVVKQRLQLESSPYKGVGDCVRRVLVEEGIGALYASYRTTVLMNAPYTAVHFATYEAAKRGLKEVSPGSDDDEGLVVHATAGAAAGSIAAALTTPLDVVKTRLQCQGVCGCDRFSSSSVGYVLGHVVKKDGYNGLMRGWLPRMLFHAPAAAICWSTYEASKTFFQQLHHDNNN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15900007 15901794 + Maker00013417 Lcy1g1585 623497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1585 320 PANTHER MITOFERRIN-1-RELATED 27 313 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Lcy1g1585 320 SUPERFAMILY Mitochondrial carrier 34 305 IPR023395 -
Lcy1g1585 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
Lcy1g1585 320 Pfam Mitochondrial carrier protein 35 118 IPR018108 -
Lcy1g1585 320 Pfam Mitochondrial carrier protein 221 313 IPR018108 -
Lcy1g1585 320 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Lcy1g1585 320 Gene3D Mitochondrial carrier domain 118 320 IPR023395 -
Lcy1g1585 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 310 IPR018108 -
Lcy1g1585 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 34 117 IPR018108 -
Lcy1g1585 320 PRINTS Mitochondrial carrier protein signature 39 52 IPR002067 GO:0055085(InterPro)
Lcy1g1585 320 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085(InterPro)
Lcy1g1585 320 PRINTS Mitochondrial carrier protein signature 52 66 IPR002067 GO:0055085(InterPro)
Lcy1g1585 320 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085(InterPro)
Lcy1g1585 320 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085(InterPro)
Lcy1g1585 320 FunFam Mitochondrial RNA-splicing protein MRS3 159 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1585 Lcy-Chr1:15900007 Lcy8g1714 Lcy-Chr8:43675023 3.45E-159 dispersed
Lcy1g1585 Lcy-Chr1:15900007 Lcy3g2112 Lcy-Chr3:48108678 2.73E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1585 K15113 - csv:101210464 564.688