Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1613 ATGCCGGACTTCAATTACGACAATCCTTCGCAGGATCTCTCCGCCTCCGCCGCCGACTCGCTGCCGGAGGGAATTCTGTTCGGGAAATACGAACTCGGGAAGCTGTTGGGATGTGGAGCTTTCGCGAAGGTCTACCATGGCAGAAACCTTCTCACGGGACAGAGCGTTGCGATCAAGGCCGTTAACAAACTCAAGGTCCTGAGAGGCGGTTTCACGGCGCACGTTAAGAGAGAGATCGCAATCATGCGCCGCCTCCGTCATCCCAACGTCGTTCGTCTGTTCGAAGTTCTCGCGACGAAGACGAAGATTTATTTCGTAATGGAGTTCGCCAAGGGAGGGGAGCTCTTCGCCAAGGTTTCCAAGGGGAGATTCAGTGAGAATCTCAGCCGTCGGTACTTCCAGCAGTTGATTACGGCCGTCGGATACTGTCATTCCAGAGGAATTTTTCATCGTGATTTGAAGCCGGAGAATCTCCTTCTCGACGACAATTTCGATCTCAGAGTTTCGGATTTCGGACTCAGCGCTTTGACGGATCAGATTCGTCCCGACGGATTGCTTCACACGCTCTGCGGAACTCCGGCCTACGTCGCGCCGGAGATTCTCGCCAAGAAAGGCTACGACGGCGCTAAGATCGACGTCTGGTCCTGCGGGATAATCCTCTACGTTCTCACCGCCGGATATCTTCCCTTTAACGATTCGAATTTAATGGCTATGTATCGGAAGATTTACAGAGGCGATTTCCGCTGCCCTAAGTGGACGTCGCCGGATCTGCGGCGGTTTCTGTCGAGGCTTCTGGACACGAATCCCGAGACGAGGATCACCGTCGACGAGATTCATCAGGATCCGTGGTTCAGAAAGGGATTTCAGGAGGAGAAGCTTCAATTCGAAGATTCCGCTTCAGAGCTTTACGGCGATGTGAGCAATGCCAAGTATTTGAATGCTTTCGATCTTATTTCGTTCTCACCTGGCTTCGATTTGACTGGATTGATCAACGAGACGGAGTTTTCGTCCGGCGTTGAGAGATTCCTCTCCGCCGAGTCCCCGGAGAAGATCATTGTGAAGGTTGAGGAGGTTTCGAAGTCGGAAAATGCGGCGGTGGAGAAGAACGGCTGGGGAGCTAAAGTGGAGGGCCACGACGGCGGTTTCGTCGCCGTTATTGATATTTTCCGGCTGACGGAGGAATTGGTGGTGGTAGAGATCAAAAACAGAGTGAGGGAAACCGATCGAGATAGTCAAATTTGGAAAGATAAATTGAGACCTCAACTCGATTGTTTAATCTACCGGTCGGACCCATAA 1296 52.08 MPDFNYDNPSQDLSASAADSLPEGILFGKYELGKLLGCGAFAKVYHGRNLLTGQSVAIKAVNKLKVLRGGFTAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFAKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTAGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFRKGFQEEKLQFEDSASELYGDVSNAKYLNAFDLISFSPGFDLTGLINETEFSSGVERFLSAESPEKIIVKVEEVSKSENAAVEKNGWGAKVEGHDGGFVAVIDIFRLTEELVVVEIKNRVRETDRDSQIWKDKLRPQLDCLIYRSDP 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16365459 16366754 - Maker00012896 Lcy1g1613 623525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1613 431 FunFam Non-specific serine/threonine protein kinase 22 308 - -
Lcy1g1613 431 SUPERFAMILY Protein kinase-like (PK-like) 26 295 IPR011009 -
Lcy1g1613 431 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524(InterPro)
Lcy1g1613 431 FunFam Aurora kinase A 24 113 - -
Lcy1g1613 431 CDD CIPK_C 313 423 - -
Lcy1g1613 431 ProSiteProfiles Protein kinase domain profile. 30 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1613 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1613 431 SMART serkin_6 30 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1613 431 Gene3D Transferase(Phosphotransferase) domain 1 23 312 - -
Lcy1g1613 431 Pfam NAF domain 310 368 IPR004041 GO:0007165(InterPro)
Lcy1g1613 431 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1613 431 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Lcy1g1613 431 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 408 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy1g1613 431 Gene3D Kinase associated domain 1, KA1 313 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1613 Lcy-Chr1:16365459 Lcy8g1696 Lcy-Chr8:43538302 1.60E-185 dispersed
Lcy1g1613 Lcy-Chr1:16365459 Lcy2g0170 Lcy-Chr2:1345199 8.12E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65673 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1613 - - - 0.0