Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1614 ATGGCGGTTTCTCCTCATTCTTTTCCACCGAGGAAGCGGCGCCCGTCGGCGGCGGCATTCGTCTCCCCGAAGCTCTCCGGCCAAATTCTCGTCCAATCGCTTCTCTCTCTCTGCCAAGAAATCTCCGCCATGAAACCGCTTCACTTCCTTCTCAACCGCTATTCCAATTCCATGATTCGAAAATCGAGTCTGCTCGAGGTTTTTCTCGAGGATCTCCGCCGCAATCGGATCGTTTCTCTTTCGGCCTCCGCGTCTCTCTGTCTCGAAGAAATGTACATCGTTTTGCAGAGAATCAAGACCTTGATTGAAGACTGTTCTAACGGAAGCAAGATGTGGCTACTCACGCAGAACGAATCCATCGCTAATTGTTTCCACGAACTCACCTTGGCTTTATCGACTCTACTCGATATCTTCCCTGTTAAGGACGCTGGATTAACAGAAGACGTCGAGGAATTGTTCTACCTCTTGAGAAATCAGTGCTATGAATCCGCCGCTTTCGTCGATCCGAGAGATGAAGATCTCCGATTCAGAGTTTTGAAGATGATCGACCGGATTAAAGACGAAATCGTCCCTGATCAATCGGAATTGTCGGAGATTTTCTCGAGGATCGATATGCGCGATTCGTCGAGTTGCAGAGAGGAAATCGAGAATCTCGAGGACGAAGTACAGAATCAAACGGATGAGAAATCGAGATCCGATGTGATTGCGTTGATCGGATTAGTTCGTTACGCGAAATGCGTGCTGTACGGAGCGTCGACGCCGGAATCTGGATTCTCGAGGAAGGATTCTATCTCCGATTTGGCTTTACCGGCGGATTTCAGGTGTCCGATTAGTCTCGATTTAATGCAGGACCCTGTCGTCGTGGCAACAGGACATACGTACGATCGTGCGGCCATTACGCTCTGGATTGAATCTGGGCACAACACGTGTCCGAAGACAGGTCAGACTCTGGCCCACACAAACCTAATTCCGAACCGGGCATTGAAAAATTTGATAGCGATGTGGTGCCGTCAGGAGAGAATTCCGTTCGACGTAACGGAAAGTAGCAAAGAGAGAGTCAACGGCGTCACGTTAAACAAGGCGGCTCTAGAAGCCATGAGAATGACGGCGTCGTTTCTCGTTAACAAACTCGCCACGTCATCAGATTCCGTAAACGACGCGAACGGCGTCGTTTACGAGCTTCGCGTTCTGGCCAAAACTGATCCCGGCAGCCGTGGATTCATCGCCCAAGCCGGAGCACTGCCGCTACTCGTCCGTTACCTCAACTCCGACGACCCGATTCTGCAGGTAAACGCCGTCACGACGCTGCTCAACCTCTCCATTTTCGAAGAGAACAAGTCTCTGATAATGGAGACCGACGGCGCGTTGATCGGAGTGATTGAGGTGCTTCGGTCCGGCGCCACGTGGGAGGCGAAAGGGAACGCCGCCGCCACGATATTCAGTCTCTCCAGTATCCATAGTTACCGGCGGAGATTGGGGAGGAAGACACGTGTCATAAGGGGATTGCTCGATTTGGCCAAAGACGGACCGATTAGTTCGAAGAGGGATGCGCTGGTGACGATTCTGACATTGGCCGGCGATCGGGAGACCGTCGGGAGGTTAATCGAAGGTGGGGTTATGGAGACGGTGGCGCATTTGATGAGCAGTCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGGAAAGGGGGATTTGTGGCGATTACTTCGGGTTTTTATGTGATTAAGAAATTGGGGGCGGTGTTGAGAGAGGGTTCCGATAGAGCTAGAGAAAGCGCCGCCGCGGCGCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATTGTGACGGAGCTGGCGTCGATGACCGGGATTGAGAGAGTCACTTGGGAGCTGATGGGGAGTGGGACGATGAGGGGGAGGCGGAAGGCGGCGTCTCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGACGGAAACAACGGCGGCGGAGGAGATTCAATGACGGTCACTTCTTCGAGAATCGTTGGCGATTCCACCACGATTGTTAGTTCATCGAGAGGAGCAATTGTGCATAGCTAG 2070 52.95 MAVSPHSFPPRKRRPSAAAFVSPKLSGQILVQSLLSLCQEISAMKPLHFLLNRYSNSMIRKSSLLEVFLEDLRRNRIVSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANCFHELTLALSTLLDIFPVKDAGLTEDVEELFYLLRNQCYESAAFVDPRDEDLRFRVLKMIDRIKDEIVPDQSELSEIFSRIDMRDSSSCREEIENLEDEVQNQTDEKSRSDVIALIGLVRYAKCVLYGASTPESGFSRKDSISDLALPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDVTESSKERVNGVTLNKAALEAMRMTASFLVNKLATSSDSVNDANGVVYELRVLAKTDPGSRGFIAQAGALPLLVRYLNSDDPILQVNAVTTLLNLSIFEENKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPISSKRDALVTILTLAGDRETVGRLIEGGVMETVAHLMSSLPEEAVTILEVVVRKGGFVAITSGFYVIKKLGAVLREGSDRARESAAAALVTMCRQGGSEIVTELASMTGIERVTWELMGSGTMRGRRKAASLLRILRRWAAGLDGNNGGGGDSMTVTSSRIVGDSTTIVSSSRGAIVHS 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16399422 16401491 + Maker00012608 Lcy1g1614 623526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1614 689 CDD RING-Ubox_PUB 270 322 IPR045210 -
Lcy1g1614 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515(InterPro)
Lcy1g1614 689 SUPERFAMILY RING/U-box 260 341 - -
Lcy1g1614 689 SMART Ubox_2 272 335 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g1614 689 PANTHER U BOX DOMAIN-CONTAINING 52 650 - -
Lcy1g1614 689 Gene3D - 371 648 IPR011989 -
Lcy1g1614 689 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Lcy1g1614 689 SMART arm_5 401 441 IPR000225 GO:0005515(InterPro)
Lcy1g1614 689 Pfam Armadillo/beta-catenin-like repeat 404 440 IPR000225 GO:0005515(InterPro)
Lcy1g1614 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 348 IPR013083 -
Lcy1g1614 689 Pfam U-box domain 270 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g1614 689 Gene3D - 31 140 IPR036537 GO:0007166(InterPro)
Lcy1g1614 689 Coils Coil 208 235 - -
Lcy1g1614 689 SUPERFAMILY ARM repeat 373 646 IPR016024 -
Lcy1g1614 689 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1614 Lcy-Chr1:16399422 Lcy5g1804 Lcy-Chr5:40796872 1.01E-135 dispersed
Lcy1g1614 Lcy-Chr1:16399422 Lcy7g0190 Lcy-Chr7:1662291 3.27E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1614 - - - 0.0