Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1617 ATGGCTGTTGAATCAGAGATTGATGAAGAATACCAACTTCAACTTATGTTTACCCAGGACGGTGCATCAGGGGATGACTACAGGATCATCATTAGTCTACTCTACCTCAATTCACCAATTTCGAACTTTATACTGAAGGTTTTTTCCGTACCAGCTTCTTTACCTATACCGCAATGGAAGCATGCACCTAAAGGTGAATTTGCTTCCGGGAAGAACAAAGTGAAAGTGAAGTTGGTAGAGAAAGAAACAGAAGAAATGGCACAGCCGATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGCCGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTGTACAAAGCCTTTGATGAGGTGCTTGGAATGGAAGTGGCTTGGAACCAAGTCCAGCTCAAAGATGTCTTCCATTCCCCTGAAGATTTACAGCGTCTCTACTCAGAAGTTCATCTCCTCAAGAACCTCAACCACGACTCGATCATCCGATTCCACGCTTCCTGGATCGATACTCATCGCCGAACGTTCAACTTCATCACCGAAATGTTCACCTCCGGCAGCCTTAGAGAGTATCGACAGAAGTATCGAAATGTCGATATCGGCGCAATCAAGAACTGGGCGCGCCAAATCCTGCGCGGATTGGTTTACCTTCATGAACACGATCCTCCCGTAATCCATAGAGACATCAAGTGTGATAACATATTCATCAATGGCCATCTTGGACAAGTTAAAATTGGTGACTTGGGACTGGCAGCAATCCTTCATGATTCTCAACATGCCCACAGCGTCATAGGCACACCAGAGTTCATGGCACCAGAGCTGTATGATGAGGAATATAATGAGCTTGTAGATGTTTATTCCTTTGGAATGTGTTTGATAGAAATGCTCACTTTGGAGTATCCCTATAGCGAGTGCTCTAACCCTGCTCAGATATACAAGAAAGTCACTTCGGGAAAATTGCCCAATGCATTCTATAAGATCAAAGGTTTGGAGGCCCAAAAATTTGTAAGAAAGTGCTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCTTCAAATGATAATGCTTCTGATAATGAAGAATTGTGTTTATCTCCAACACCAAAGAAATCAGTTGCAAGAAGAACAGACATGGCCATTTCTGGATCCATGAATCCCAAGGATAATGATAAAGTTTTTCTCAAAGTGCAGATTAAAGTGAAGAATGGTAAGGCTAAGAACGTGTACTTTGCGTTCGACACTATAAACGACACTGCAATTGATGTTGCGACCGAGATGGTTAAAGAGTTGGAAATTAGTGACTGGGATCCATTGGAGATAGCTGTGATGATAAAGAAGGAGATATCCACATTGATTCCAGATTGGGAGGAATGGAACATACCCAAAAATCACCATCAAGATAGCTTCAACTACGACGTCGGGAACGACGACGACGATGACGACGACGACGAAAACAATGTGACACCACATCCTTTCTACTCTTGCTCCTCTCATGCCTCCTCCTCAAATTCTCTTCAGGGTTTCTACTCTTTATATGACAACCCCCATCATTTTGGAGGAAGGAATGGAACCTCTACTGCCACTGAATGGTTTCAAGAGGATCTTCTCATTGATGAGGATGCAAGTTCTAGCTGCTCTCAAAACTCCTTCAATTACTCTGATGTAAGCTTTGACTCAAACAATGAAGATGACTATGAAAGTGATCCACATCTCAAAGGAAGAGAGCCTCATAACATCTCAACAACCAAGCAACCTACAAGATTTTGCCCCACCATGAAGATAGACACACACAATTTGAGGCACAAGGACAATCAAATAATGCTCGATAGAGAATTCGAGATACAATATCGATCAAACAATAACTCGCATAGACTTACGAGGGTGAAATCGATGGTGAACCTCCGTAGTAGCGAGACGTTGCACCGGTCCTTAGTAGAGATGTTGTTGAAGAAGCGATTGTTCAATACGGTGGGAGCAATGGAGAATATTGGATACCAAAAGCCATAG 2037 42.91 MAVESEIDEEYQLQLMFTQDGASGDDYRIIISLLYLNSPISNFILKVFSVPASLPIPQWKHAPKGEFASGKNKVKVKLVEKETEEMAQPIGYAETDPSGRYGRFREILGKGAMKTVYKAFDEVLGMEVAWNQVQLKDVFHSPEDLQRLYSEVHLLKNLNHDSIIRFHASWIDTHRRTFNFITEMFTSGSLREYRQKYRNVDIGAIKNWARQILRGLVYLHEHDPPVIHRDIKCDNIFINGHLGQVKIGDLGLAAILHDSQHAHSVIGTPEFMAPELYDEEYNELVDVYSFGMCLIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYKIKGLEAQKFVRKCLENVSKRLPARELLLDPFLASNDNASDNEELCLSPTPKKSVARRTDMAISGSMNPKDNDKVFLKVQIKVKNGKAKNVYFAFDTINDTAIDVATEMVKELEISDWDPLEIAVMIKKEISTLIPDWEEWNIPKNHHQDSFNYDVGNDDDDDDDDENNVTPHPFYSCSSHASSSNSLQGFYSLYDNPHHFGGRNGTSTATEWFQEDLLIDEDASSSCSQNSFNYSDVSFDSNNEDDYESDPHLKGREPHNISTTKQPTRFCPTMKIDTHNLRHKDNQIMLDREFEIQYRSNNNSHRLTRVKSMVNLRSSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16471122 16479103 - Maker00013172 Lcy1g1617 623529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1617 678 Gene3D Phosphorylase Kinase; domain 1 87 183 - -
Lcy1g1617 678 SUPERFAMILY Protein kinase-like (PK-like) 104 361 IPR011009 -
Lcy1g1617 678 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 83 673 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lcy1g1617 678 Gene3D - 388 468 - -
Lcy1g1617 678 MobiDBLite consensus disorder prediction 573 587 - -
Lcy1g1617 678 FunFam probable serine/threonine-protein kinase WNK9 185 365 - -
Lcy1g1617 678 SMART serkin_6 102 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1617 678 Gene3D Transferase(Phosphotransferase) domain 1 185 368 - -
Lcy1g1617 678 MobiDBLite consensus disorder prediction 479 505 - -
Lcy1g1617 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1617 678 MobiDBLite consensus disorder prediction 566 594 - -
Lcy1g1617 678 FunFam Probable serine/threonine-protein kinase WNK1 86 183 - -
Lcy1g1617 678 ProSiteProfiles Protein kinase domain profile. 102 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1617 678 CDD STKc_WNK 100 360 - -
Lcy1g1617 678 Pfam Protein kinase domain 106 359 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1617 Lcy-Chr1:16471122 Lcy8g1692 Lcy-Chr8:43517851 9.47E-206 dispersed
Lcy1g1617 Lcy-Chr1:16471122 Lcy4g1952 Lcy-Chr4:45859161 1.22E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65674 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1617 K08867 - csv:101207665 944.11