Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1617 | ATGGCTGTTGAATCAGAGATTGATGAAGAATACCAACTTCAACTTATGTTTACCCAGGACGGTGCATCAGGGGATGACTACAGGATCATCATTAGTCTACTCTACCTCAATTCACCAATTTCGAACTTTATACTGAAGGTTTTTTCCGTACCAGCTTCTTTACCTATACCGCAATGGAAGCATGCACCTAAAGGTGAATTTGCTTCCGGGAAGAACAAAGTGAAAGTGAAGTTGGTAGAGAAAGAAACAGAAGAAATGGCACAGCCGATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGCCGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTGTACAAAGCCTTTGATGAGGTGCTTGGAATGGAAGTGGCTTGGAACCAAGTCCAGCTCAAAGATGTCTTCCATTCCCCTGAAGATTTACAGCGTCTCTACTCAGAAGTTCATCTCCTCAAGAACCTCAACCACGACTCGATCATCCGATTCCACGCTTCCTGGATCGATACTCATCGCCGAACGTTCAACTTCATCACCGAAATGTTCACCTCCGGCAGCCTTAGAGAGTATCGACAGAAGTATCGAAATGTCGATATCGGCGCAATCAAGAACTGGGCGCGCCAAATCCTGCGCGGATTGGTTTACCTTCATGAACACGATCCTCCCGTAATCCATAGAGACATCAAGTGTGATAACATATTCATCAATGGCCATCTTGGACAAGTTAAAATTGGTGACTTGGGACTGGCAGCAATCCTTCATGATTCTCAACATGCCCACAGCGTCATAGGCACACCAGAGTTCATGGCACCAGAGCTGTATGATGAGGAATATAATGAGCTTGTAGATGTTTATTCCTTTGGAATGTGTTTGATAGAAATGCTCACTTTGGAGTATCCCTATAGCGAGTGCTCTAACCCTGCTCAGATATACAAGAAAGTCACTTCGGGAAAATTGCCCAATGCATTCTATAAGATCAAAGGTTTGGAGGCCCAAAAATTTGTAAGAAAGTGCTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCTTCAAATGATAATGCTTCTGATAATGAAGAATTGTGTTTATCTCCAACACCAAAGAAATCAGTTGCAAGAAGAACAGACATGGCCATTTCTGGATCCATGAATCCCAAGGATAATGATAAAGTTTTTCTCAAAGTGCAGATTAAAGTGAAGAATGGTAAGGCTAAGAACGTGTACTTTGCGTTCGACACTATAAACGACACTGCAATTGATGTTGCGACCGAGATGGTTAAAGAGTTGGAAATTAGTGACTGGGATCCATTGGAGATAGCTGTGATGATAAAGAAGGAGATATCCACATTGATTCCAGATTGGGAGGAATGGAACATACCCAAAAATCACCATCAAGATAGCTTCAACTACGACGTCGGGAACGACGACGACGATGACGACGACGACGAAAACAATGTGACACCACATCCTTTCTACTCTTGCTCCTCTCATGCCTCCTCCTCAAATTCTCTTCAGGGTTTCTACTCTTTATATGACAACCCCCATCATTTTGGAGGAAGGAATGGAACCTCTACTGCCACTGAATGGTTTCAAGAGGATCTTCTCATTGATGAGGATGCAAGTTCTAGCTGCTCTCAAAACTCCTTCAATTACTCTGATGTAAGCTTTGACTCAAACAATGAAGATGACTATGAAAGTGATCCACATCTCAAAGGAAGAGAGCCTCATAACATCTCAACAACCAAGCAACCTACAAGATTTTGCCCCACCATGAAGATAGACACACACAATTTGAGGCACAAGGACAATCAAATAATGCTCGATAGAGAATTCGAGATACAATATCGATCAAACAATAACTCGCATAGACTTACGAGGGTGAAATCGATGGTGAACCTCCGTAGTAGCGAGACGTTGCACCGGTCCTTAGTAGAGATGTTGTTGAAGAAGCGATTGTTCAATACGGTGGGAGCAATGGAGAATATTGGATACCAAAAGCCATAG | 2037 | 42.91 | MAVESEIDEEYQLQLMFTQDGASGDDYRIIISLLYLNSPISNFILKVFSVPASLPIPQWKHAPKGEFASGKNKVKVKLVEKETEEMAQPIGYAETDPSGRYGRFREILGKGAMKTVYKAFDEVLGMEVAWNQVQLKDVFHSPEDLQRLYSEVHLLKNLNHDSIIRFHASWIDTHRRTFNFITEMFTSGSLREYRQKYRNVDIGAIKNWARQILRGLVYLHEHDPPVIHRDIKCDNIFINGHLGQVKIGDLGLAAILHDSQHAHSVIGTPEFMAPELYDEEYNELVDVYSFGMCLIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYKIKGLEAQKFVRKCLENVSKRLPARELLLDPFLASNDNASDNEELCLSPTPKKSVARRTDMAISGSMNPKDNDKVFLKVQIKVKNGKAKNVYFAFDTINDTAIDVATEMVKELEISDWDPLEIAVMIKKEISTLIPDWEEWNIPKNHHQDSFNYDVGNDDDDDDDDENNVTPHPFYSCSSHASSSNSLQGFYSLYDNPHHFGGRNGTSTATEWFQEDLLIDEDASSSCSQNSFNYSDVSFDSNNEDDYESDPHLKGREPHNISTTKQPTRFCPTMKIDTHNLRHKDNQIMLDREFEIQYRSNNNSHRLTRVKSMVNLRSSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP | 678 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16471122 | 16479103 | - | Maker00013172 | Lcy1g1617 | 623529 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1617 | 678 | Gene3D | Phosphorylase Kinase; domain 1 | 87 | 183 | - | - | |
Lcy1g1617 | 678 | SUPERFAMILY | Protein kinase-like (PK-like) | 104 | 361 | IPR011009 | - | |
Lcy1g1617 | 678 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 83 | 673 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Lcy1g1617 | 678 | Gene3D | - | 388 | 468 | - | - | |
Lcy1g1617 | 678 | MobiDBLite | consensus disorder prediction | 573 | 587 | - | - | |
Lcy1g1617 | 678 | FunFam | probable serine/threonine-protein kinase WNK9 | 185 | 365 | - | - | |
Lcy1g1617 | 678 | SMART | serkin_6 | 102 | 360 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1617 | 678 | Gene3D | Transferase(Phosphotransferase) domain 1 | 185 | 368 | - | - | |
Lcy1g1617 | 678 | MobiDBLite | consensus disorder prediction | 479 | 505 | - | - | |
Lcy1g1617 | 678 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 226 | 238 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g1617 | 678 | MobiDBLite | consensus disorder prediction | 566 | 594 | - | - | |
Lcy1g1617 | 678 | FunFam | Probable serine/threonine-protein kinase WNK1 | 86 | 183 | - | - | |
Lcy1g1617 | 678 | ProSiteProfiles | Protein kinase domain profile. | 102 | 360 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1617 | 678 | CDD | STKc_WNK | 100 | 360 | - | - | |
Lcy1g1617 | 678 | Pfam | Protein kinase domain | 106 | 359 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1617 | Lcy-Chr1:16471122 | Lcy8g1692 | Lcy-Chr8:43517851 | 9.47E-206 | dispersed | |
Lcy1g1617 | Lcy-Chr1:16471122 | Lcy4g1952 | Lcy-Chr4:45859161 | 1.22E-133 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65674 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g1617 | K08867 | - | csv:101207665 | 944.11 |