Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1623 ATGACTTCTGGTCAGCCTCTGCTGGCTTCATCAGAATCAACATCAGTTATTGAATACGGATCCCCATCTCGAAATTTTGGTTCCGTTGGTTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGCTCAGAGTGACATTGTGGATGTGAAGGAAAACTGCGCCAGCCCTTTTGAAGATAACGGTTGGAGTAGTGAGAATTGTCTGAGACAAACCACTTCTCTTTCTAAGAAGAGGCAGTTTTATACAGTTGGCTCTCTATTTCCTCAGCAGCTTCCTTTTGGCTTCCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGTAATGGAGCTTCATAATATTAATGAGGACCCTGCGAGCTTTGAACTTTCTAGGGTCCAGGAGAAGCTGCATAAGGCGCAAAGAAGTCGTCATAAGAGTATGCAATTTGATGATAATTTACAGCATGACGATAATCCAAGGTTGATCTACATTAATGATCCAAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACTAGCAAGTACACATTGATTACCTTCTTGCCAAAGAACCTCTTTATTCAGTTCCACCGCGTTGCCTATCTTTATTTTCTTGCTATTGCAGCTCTTAACCAGCTTCCTCCTTTGGCAGTCTTTGGGAGAACGGTCTCTCTTTTCCCCCTCCTGTTTGTGCTCTGTGTTACAGCTATTAAAGATGGCTACGAGGATTGGCGTAGACACAGATCAGATCGCAATGAGAACAATAGACAGGCTCTTGTGTTTCAATCTGATGACTTCCGATTGAAAGTGTGGAAAAGAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCAGATGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCTAGTGGCCTTGCTTACATTCAAACAATGAATTTAGATGGTGAATCAAACTTGAAGACAAGGTACGCCAGGCAAGAAACAGCATCAGCAGTAGCTGAGGGGTGTTCATATAATGGTCTTATTCGATGTGAACAACCCAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTCAACGGCCATAAATTTCCCCTCAGCCAGTCAAATATAGTATTGCGTGGTTGTCAGCTGAAGAACACCGAATGGATTATTGGGGTGGTTGTCTATGCTGGACAAGAGACAAAAGCCATGTTAAACAGTGCAGTGTCTCCCGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATCTTCCTCTTTATCATGTGTCTAGTTGTGGCCCTTGGAATGGGTTTATGGCTTGTTCGTCACAAGGATCGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACAAATGGGGCAGAGGATGGTAAGAAGTACAGGTTTTATGGAATACCTATGGAGACCTTTTTCTCTTTTTTGAGTTCTATTATAGTGTTTCAGATTATGATACCAATATCCCTTTATATTACAATGGAGATGGTGAGACTGGGTCAGTCATATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTCGCTCAAGGTTCCAGTGCAGATCATTGAATATCAATGAGGATCTTGGTCAAGTTCGCTATGTATTTTCTGATAAAACAGGAACACTTACTGAAAATAAAATGGAATTCAAAAGAGCAAGTGTGTTTGGGAAGAATTACGGGAACAACTTGTCTGAGGGATATTCACCAATGTCGTATTCCATTCCAGCAACTTTAGGGAGGAGGAGGTGGAAACTTCAATCTGACGTTGCTGTTGATACCGAACTTGTCAAATTATTACACAAGGACCTAAACGGAGATGAAAAGATTGCTGCGCATGAATTTTTTCTTACATTGGCTGCATGCAATACTGTGATTCCTATTCTCATGGATGAAAAATCTAGTTTTGCAAATGGTGAATTGGACGAGGATTTCAAAACTATTAATTATCAGGGGGAATCCCCTGATGAGCAAGCACTAGTTGCTGCAGCCTCTGCTTATGGATATACCCTTTTTGAGCGCACATCCGGGCATATTGTTATAGATGTCAATGGTGAGAACTTAAGGTTAGATGTTTTGGGTTTACATGAGTTCGATAGTGTTCGCAAAAGAATGTCTGTTGTCATCAGATTCCCCGACAACACTATAAAGGTGCTGGTGAAAGGTGCTGATACTTCAATGTTGAGTGTTTTACGCAACGATTCGGATAGGGAAGAATCGATCAAGCATACTACTCAGAGCCATTTGTGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGGCAGATTCTGAATTTGAGCTGTGGCAGAGCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAGTAAAACTACGTCAGACAGCGGCCCTTATAGAATGTGATCTAAAGCTTTTGGGTGCAACTGCTATTGAGGACAAGCTTCAAGATGGTGTACCTGAAGCCATTGAATCTCTTCGCCAGGCAGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATTGGTCTCTCCTGCAAACTGCTGACTTCAGACATGCTGTCAATTATTATCAATGGAAATTCCGAGAATGATTGCAGGCAACTTTTAAAGGATGCTATCGAAAAATTTGGTATTGCATCAACACAGGGTGGATGTCAAAGACAGAAGCTGAAGAATTGTGAGAATGACTGTCATGATACACCGAAGACATCTAGTCTGCCAGATTTTAATGAAGTGAATGAGAAAGAAGAAGGGACTGATAAACAACGAGCTCTAATAATTGATGGAAACAGTTTGGTGTACATTTTGGAGAAGGAATTGGAGTCAGAGGCAAGAATCTTGTTGTTACCTTTGAGAAGCTTTACTAATATCATTCTAATACTTTATGACTTGTTAATGATTGTTGGAATAATTCCTATTTTCTGGCAGCTTTTTGACCTCGCAACTTCATGTGATGTTGTGCTATGCTGTCGTGTCGCACCTTTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGAGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGCGTTGGTATATGTGGACAGGAAGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTTTAAAAAGATTACTTCTAGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGCAATGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTTTATGCACAGCATTCTCAACAACTTCAGCTTTGACTGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACGTCTATCCCTACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTCACAAAACCCTACTACAATATCCAAAGCTCTATGGTGCGGGCCATAGACAGGAGGCATATAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTGCCATTATACATTTACAAGGAGAGTTCCATTGATATATGGAGCTTGGGAAGTCTGTGGACCATAGCAGTTGTTATCCTTGTGAATGTACACTTGGCGATGGATGTTCAACGTTGGGTATATATTACACATGCTGCAGTTTGGGGATCAATAGTCATAACATATGCCTGCATGGTGGTGTTGGATTCAATACCCGTATTTCCTAATTACTGGACAATCTTTCATCTGGCTAAGTCCCCGACCTATTGGTTGACTATATTGCTCATAATAGTTGTAGCGTTGCTTCCACGCTATCTTTTTAAAGTTGTGAACCAAAGATTTTGGCCCTCAGATATTCAGATAGCCAAAGAAGCCGAGGTACTGAGAAAACGGAAAGGTCGTGAACAATTGGGTTCAAAGCGAGATCGAGATTCCAATTAA 3990 41.4 MTSGQPLLASSESTSVIEYGSPSRNFGSVGCLCRSASFTSSSYDDAQSDIVDVKENCASPFEDNGWSSENCLRQTTSLSKKRQFYTVGSLFPQQLPFGFPTQDRRRLVSWGVMELHNINEDPASFELSRVQEKLHKAQRSRHKSMQFDDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDDFRLKVWKRIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYNGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAVSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGLWLVRHKDRLDTLPYYRKRYFTNGAEDGKKYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISRSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKRASVFGKNYGNNLSEGYSPMSYSIPATLGRRRWKLQSDVAVDTELVKLLHKDLNGDEKIAAHEFFLTLAACNTVIPILMDEKSSFANGELDEDFKTINYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMLSVLRNDSDREESIKHTTQSHLCEYSMEGLRTLVVAARDLADSEFELWQSRYEDASTSLTERAVKLRQTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMLSIIINGNSENDCRQLLKDAIEKFGIASTQGGCQRQKLKNCENDCHDTPKTSSLPDFNEVNEKEEGTDKQRALIIDGNSLVYILEKELESEARILLLPLRSFTNIILILYDLLMIVGIIPIFWQLFDLATSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSHKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESSIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAKEAEVLRKRKGREQLGSKRDRDSN 1329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16568295 16576311 - Maker00012466 Lcy1g1623 623535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1623 1329 Pfam Phospholipid-translocating ATPase N-terminal 160 225 IPR032631 -
Lcy1g1623 1329 Gene3D - 236 402 - -
Lcy1g1623 1329 Gene3D - 522 542 - -
Lcy1g1623 1329 SFLD p-type atpase 530 1083 IPR044492 -
Lcy1g1623 1329 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 149 1309 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lcy1g1623 1329 SUPERFAMILY HAD-like 533 1077 IPR036412 -
Lcy1g1623 1329 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1299 IPR023298 -
Lcy1g1623 1329 NCBIfam phospholipid-translocating P-type ATPase 174 960 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lcy1g1623 1329 Gene3D - 814 1072 IPR023214 -
Lcy1g1623 1329 Gene3D - 543 555 IPR023214 -
Lcy1g1623 1329 NCBIfam HAD-IC family P-type ATPase 479 570 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy1g1623 1329 NCBIfam HAD-IC family P-type ATPase 1003 1118 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy1g1623 1329 CDD P-type_ATPase_APLT_Dnf-like 176 1192 - -
Lcy1g1623 1329 SFLD C1.7: P-type atpase like 530 1083 - -
Lcy1g1623 1329 SUPERFAMILY Calcium ATPase, transduction domain A 257 398 IPR008250 -
Lcy1g1623 1329 Gene3D - 658 797 IPR023299 GO:0000166(InterPro)
Lcy1g1623 1329 ProSitePatterns E1-E2 ATPases phosphorylation site. 548 554 IPR018303 -
Lcy1g1623 1329 FunFam Phospholipid-transporting ATPase 660 804 - -
Lcy1g1623 1329 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 552 830 IPR023299 GO:0000166(InterPro)
Lcy1g1623 1329 Pfam haloacid dehalogenase-like hydrolase 795 894 - -
Lcy1g1623 1329 Pfam Phospholipid-translocating P-type ATPase C-terminal 1060 1300 IPR032630 -
Lcy1g1623 1329 Gene3D - 556 568 IPR023299 GO:0000166(InterPro)
Lcy1g1623 1329 Pfam Cation transport ATPase (P-type) 661 739 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1644 Lcy-Chr10:40841248 Lcy1g1623 Lcy-Chr1:16568295 0 dispersed
Lcy10g1646 Lcy-Chr10:40884601 Lcy1g1623 Lcy-Chr1:16568295 0 dispersed
Lcy1g1623 Lcy-Chr1:16568295 Lcy7g0228 Lcy-Chr7:1985149 5.46E-217 dispersed
Lcy1g1623 Lcy-Chr1:16568295 Lcy5g2449 Lcy-Chr5:47270391 1.88E-206 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1623 K14802 - csv:101206692 2368.96