Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1627 ATGAAGGAAATTCATAAGTCCCCTCTTGCATTTGCATTTATCTCTGTTTTCGTTTGCTTGTTCTTCGATGCCCATGTGGTTTTAGCACAAAATTACATCCCTCGGGATTTCATCCTCCTCGACTGTGGAGGGCCTTCGACTGCTAACGACATCGATGGCCGGAAGTGGTATACCGATGACAAATCCAAGTTTGTTCCGGCGACGGGGGATAGCACTACATCGAAAGCCGCTACTCAGGATCCTTCAGTTCCTGAAATCCCTTTCATGACGGCTAGGGTTTTCCATTCTAATTTCACCTATAGCTTTCCTGTGGCTCCTAGTCGTTTATTCGTTCGTCTGTACTTTTACCCTTCTTCTTATGGTGGCCTTGATGCATCTGATGCTCGTTTCTCTGTCTCCACTCAGTCCTATACTCTTCTTAATAACTTCAGCGTTTCACAAACTGCTGAGGCTTTGAATTTTGCCTATATCATTAAGGAATACTCAATCCATGTTGAAGATGGAAGGTTGAACTTGACTTTCGTTCCATCCTCCAGTCATCCAAAGGCTTATGCATTTGTGAATGGGATTGAGATTGTATCTATGGCTGATATTTACAGTGGGTCTCCTCTTATTGTTGGCCCATCTACTCTTTTCAATATGGATAATGGCACTGCGCTCGAGAATGTCTATCGGTTGAATGTCGGGGGGAATGATATTTCGCCTTCTGATGATACGGGGATGTATAGGTCTTGGTTTGATGACACTCCATACTTGTTTGGTGCAGCACAGGGAGTGACAATGAGTACTGATCAGAACACAACGATTGATTATCCGCCTGCCATTCCTACGTATGTTGCGCCGAATAATGTCTACTCCACTGCTAGAGCAATGGGACCTAATAGCAATGTCAATCTGAATTATAATTTGACATGGATTTTCTCTGTTGACTCTGGGTTCTCTTACCTTGTTAGGCTCCATTTTTGTGAGATTGCTCAAAATATCACAAAAGTTAACCAGAGAGTGTTCAACATTTTCCTCTTTAATCGAACTGCTACGTCTGGTGCTGATGTTATTGTCTGGGCTGGTAAAAGTGATACTCCTGTGATCCAAGATTATGTGGTCTTCGTTCCAGATTATGGAAGTCCGCAGATATATTTATGGCTCGAATTGAATCCTGACAAGACCGCGATCCCAAATTACTATGATGCAATCTTGAACGGAGTGGAGATATTCAAAATCAACAACTCGAATGGTAATCTTTCAGGGCCGAATCCTATTCCTGCGCCAAAACAGGATAATATTGATCCATCATTAGCAAAGCCAGCATCTTCTCATGGTAAATCGAAGAATAAGACAGCAATTATTGCTGGAGTTGTTTGTGGTGCAGTTGTTTTAGCTCTGATCATTGGTTTCTTTGTTGTTGCTAAACGTCGCCGTGGGGGTGGGAAAGATTCTAGTACTGTCGAAGGACCATCAGGATGGCTCCCTCTTTCTCTCTATGGAAATTCCCATTCGGCTGGATCTGCTAAGACAAATACAACTGGAAGCTATACATCCTCCCTGCCTTCCAACCTTTGCCGCCACTTCTCATTTTCTGAGATCAAGGCTGCCACAAGGGACTTTGATGAATCTTTACTACTTGGAGTGGGTGGTTTTGGCAAGGTTTACAAGGGAGAAATTGATGGTGGGACTACAAAAGTTGCGATCAAGCGCGGGAACCCTCTTTCCGAGCAAGGTGTGCATGAATTTCAAACTGAGATTGAAATGCTCTCTAAGCTTCGCCATCGCCACCTTGTTTCGTTGATTGGCTACTGTGAAGAGAATTGTGAAATGATCCTGGTTTATGATTACATGGCTCATGGAACACTCCGAGAACATCTATACAAGACCAACAAACCACCATTGTCTTGGAGGCAAAGGCTCGAGATATGCATCGGAGCTGCCCGTGGTCTGCATTATCTCCACACTGGTGCCAAACATACAATTATTCACCGAGATGTGAAGACAACCAACATCCTCCTGGATGAAAAGTGGGTGGCAAAAGTATCTGATTTCGGTTTGTCGAAAACTGGTCCTACATTGGATCACACACATGTCAGCACTGTAGTGAAAGGTAGTTTTGGATACTTGGATCCCGAATACTTTAGGCGGCAGCAATTGACCGACAAATCAGATGTTTACTCCTTCGGAGTCGTTCTGTTCGAGGTCCTGTGCGCTCGGCCAGCCCTGAACCCAACACTCCCCAAGGAGCAAGTGAGTTTAGCCGAATGGGCTGCACACTGCTACAACAAAGGCATTTTAGATCAGATAATCGACTCATACCTAAAGGGGAAGATTGCATCAGAGTGTCTCAAGAAATTTGCAGGGACAGCAATGAAATGTGTGTTGGATCAGGGCATCGACAGGCCATCAATGGGCGACGTTCTCTGGAATCTAGAGTTTGCATTGCAGCTGCAGGAGAGCGCAGAAGAGAGCGGCAAGCTAGGCAGTGGGATAGAAGTAGAAGAAGGTCAGCTCGACGTAGTTTACAAAGGGAAGAAGGATTCAGACGCTTCCCCCCTCGTCGATGGAAACATAACCGACTCGAGAAGCACCGGAATCAGTATGAGCATCGGAAGCCGAAGCCTCGCCAGTGAAGATTCCGACGGGTTGACGCCAAGTGCTGTGTTCTCACAGATCATGAACCCAAAAGGTCGTTAA 2682 45.15 MKEIHKSPLAFAFISVFVCLFFDAHVVLAQNYIPRDFILLDCGGPSTANDIDGRKWYTDDKSKFVPATGDSTTSKAATQDPSVPEIPFMTARVFHSNFTYSFPVAPSRLFVRLYFYPSSYGGLDASDARFSVSTQSYTLLNNFSVSQTAEALNFAYIIKEYSIHVEDGRLNLTFVPSSSHPKAYAFVNGIEIVSMADIYSGSPLIVGPSTLFNMDNGTALENVYRLNVGGNDISPSDDTGMYRSWFDDTPYLFGAAQGVTMSTDQNTTIDYPPAIPTYVAPNNVYSTARAMGPNSNVNLNYNLTWIFSVDSGFSYLVRLHFCEIAQNITKVNQRVFNIFLFNRTATSGADVIVWAGKSDTPVIQDYVVFVPDYGSPQIYLWLELNPDKTAIPNYYDAILNGVEIFKINNSNGNLSGPNPIPAPKQDNIDPSLAKPASSHGKSKNKTAIIAGVVCGAVVLALIIGFFVVAKRRRGGGKDSSTVEGPSGWLPLSLYGNSHSAGSAKTNTTGSYTSSLPSNLCRHFSFSEIKAATRDFDESLLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTNKPPLSWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQVSLAEWAAHCYNKGILDQIIDSYLKGKIASECLKKFAGTAMKCVLDQGIDRPSMGDVLWNLEFALQLQESAEESGKLGSGIEVEEGQLDVVYKGKKDSDASPLVDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16630317 16632998 + Maker00012650 Lcy1g1627 623539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1627 893 FunFam FERONIA receptor-like kinase 37 196 - -
Lcy1g1627 893 ProSitePatterns Protein kinases ATP-binding region signature. 541 564 IPR017441 GO:0005524(InterPro)
Lcy1g1627 893 FunFam Receptor-like protein kinase FERONIA 507 611 - -
Lcy1g1627 893 FunFam Receptor-like protein kinase FERONIA 612 822 - -
Lcy1g1627 893 MobiDBLite consensus disorder prediction 849 886 - -
Lcy1g1627 893 CDD STKc_IRAK 541 807 - -
Lcy1g1627 893 Gene3D Transferase(Phosphotransferase) domain 1 612 825 - -
Lcy1g1627 893 SUPERFAMILY Protein kinase-like (PK-like) 508 808 IPR011009 -
Lcy1g1627 893 MobiDBLite consensus disorder prediction 415 441 - -
Lcy1g1627 893 ProSiteProfiles Protein kinase domain profile. 535 809 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1627 893 Pfam Malectin-like domain 40 407 IPR024788 -
Lcy1g1627 893 MobiDBLite consensus disorder prediction 842 893 - -
Lcy1g1627 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1627 893 Gene3D Phosphorylase Kinase; domain 1 520 611 - -
Lcy1g1627 893 FunFam FERONIA receptor-like kinase 218 408 - -
Lcy1g1627 893 PANTHER OS03G0124300 PROTEIN-RELATED 13 473 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Lcy1g1627 893 Pfam Protein tyrosine and serine/threonine kinase 541 802 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1627 893 SMART serkin_6 535 809 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1627 893 Gene3D - 219 408 - -
Lcy1g1627 893 Gene3D - 37 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1627 Lcy-Chr1:16630317 Lcy4g1986 Lcy-Chr4:46267795 4.42E-283 dispersed
Lcy3g0281 Lcy-Chr3:9193256 Lcy1g1627 Lcy-Chr1:16630317 1.70E-31 dispersed
Lcy1g1627 Lcy-Chr1:16630317 Lcy1g1635 Lcy-Chr1:16732750 2.96E-66 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65677 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1627 - - - 0.0