Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1630 ATGGCGGAGAGATTCCCATTTGAAGAACTGACTCGGGGCGGCGAAACAGTAGACGGCGGCGGCGACGGTGGCTTGACGGTGAATCTTGAGTCCAACGGCTTCTTTCTGTTACTGTTTTCATCACAATTTGTTTGTTATGTTTCACTTACTGCAAATTCCTCCATGAGGCTACAATCCCTTTTTGCAGCATCATCCTTACTCTTACTCATATACTTTCTCTCCTTCATTGCTGCTGATCTGAACTCAGACAAGCAAGCTCTTCTCGAGTTTATTTCGACGGTTCCCCATGGTCGAAAAATCAACTGGGATCCTTCTACCTCGGTTTGCACTACTTGGGTTGGCATCACTTGCACTTCAGACCTCTCAAATGTTCTTGCTCTCAGACTGCCCGCCATTGGACTGTACGGTCCGATCCCAGCCAATACACTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAACCTTCCATCAGATGTGCTATCCCTTCCCTCCTTAAAGTTTATATATCTTCAACACAATAACTTTTCTGGTAAAATTCCTTCTTCCCTGTCTCCTGGCCTTACCTTCCTTGATCTGTCCTTCAACTCTCTCACAGGAAACATTTCAACGTCGATACGAAATTTAACGCGCCTCACTGGCCTCAACCTTCAAAACAACTCCCTGACCGGATCCATTCCTGATATAGGTCACCTAAAGCTTAAGCAATTAAACTTGAGCTACAACCATTTTAGTGGTCCCATTCCTGCTTCACTGCAATCATTTCCTCCTTCTTCCTTTGAAGGAAACTTATTGCTATGTGGCTCTCCTCTGAAAAATTGTTCAACTGGTGCCCCCTTACCATCTCCGTCTCCCACTGATTCAACCCCGCACACAAAGAAAAAAAGTGAAAAGAGAATAAATATCGGAGCAATTGTCGCCATTGCATTAGGTGGTTCTGCAGTGCTGTTTCTTCTGGTGTTAATGATTATTGTCTGCTGTATGAAGAAAAAAGATGGTGAAGGTAATACTGCTGCAGTGAAAGGAAAGGGTAAAAGAAGCGAGCAACCGAAGGAGGATTTCGGAAGTGGTGTACAAGAGCCAGAGAAAAATAGGCTGGTTTTCTTTGAAGGATGTTCTTATAACTTTGATCTTGAGGACTTGTTAAGGGCCTCGGCTGAAGTGCTTGGAAAGGGGAGTTATGGGACTACTTACAAGGCAATCTTGGAGGAAGGAACAACAGTGGTAGTAAAGAGGTTGAAAGAAGTGGTGGTTGGCAAAAAGGAATTTGATCAACAGATGGAGATTGTTGGGAGGATGGGGCAGCATCCAAGCGTCGTGCCTCTCCGCGCCTATTACTATTCGAAAGACGAGAAGCTTTTAGTCTACGATTATGCCGTTGCTGGAAGCTTTTCAGCATTACTCCGTGGAAGCCGAGAAGGCGGACGAGCACCTCCAGATTGGGAAACAAGAGTGAAGGTTTCACTGGGAAGTGCCAAAGGCCTTGCACATATCCATTCAGCAAGTGGGGGAAAGTTCATCCATGGAAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTACATGGTTGTATTTCAGATTTTGGCCTGACTCCTTTGATGAACTCCCCTGCCATTCCCTCTCGGAGCTCGGGTTATCGAGCTCCAGAGGTGATCGAGACTCGGAAATCAACTCAAAAGTCTGATGTTTACAGTTTTGGAGTCGTTTTGCTGGAGATGTTGACAGGGAAATCGCCATCCCAATCGCCAGGGCGCGACGATGTAATGGACCTTCCAAGATGGGTCCAGTCTGTGGTAAGAGAGGAATGGACATCAGAGGTGTTTGATGTAGAGCTAATGAAGTATCAGAACATTGAAGAAGAGTTGGTTCAAATGCTCCAAATAGCAATGGCCTGCGTGTCTCGAGTGCCCGATATGAGACCAACAATGGAGGAAGTGGTTAGGATGATTGAGGAAATCCGACCAACTGACTCAGGAACAAGACCATCATCAGAAGATAACAAAGCCGGGGACGGGGACGGGGACGGGGACGGGGACGGGGACGATGACTCGAATACTCAGAACTTGTAA 2094 45.94 MAERFPFEELTRGGETVDGGGDGGLTVNLESNGFFLLLFSSQFVCYVSLTANSSMRLQSLFAASSLLLLIYFLSFIAADLNSDKQALLEFISTVPHGRKINWDPSTSVCTTWVGITCTSDLSNVLALRLPAIGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPSLKFIYLQHNNFSGKIPSSLSPGLTFLDLSFNSLTGNISTSIRNLTRLTGLNLQNNSLTGSIPDIGHLKLKQLNLSYNHFSGPIPASLQSFPPSSFEGNLLLCGSPLKNCSTGAPLPSPSPTDSTPHTKKKSEKRINIGAIVAIALGGSAVLFLLVLMIIVCCMKKKDGEGNTAAVKGKGKRSEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGTTVVVKRLKEVVVGKKEFDQQMEIVGRMGQHPSVVPLRAYYYSKDEKLLVYDYAVAGSFSALLRGSREGGRAPPDWETRVKVSLGSAKGLAHIHSASGGKFIHGNIKSSNILLTQDLHGCISDFGLTPLMNSPAIPSRSSGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKSPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEEIRPTDSGTRPSSEDNKAGDGDGDGDGDGDDDSNTQNL 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16652898 16657530 - Maker00013009 Lcy1g1630 623542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1630 697 SUPERFAMILY Protein kinase-like (PK-like) 394 659 IPR011009 -
Lcy1g1630 697 ProSiteProfiles Leucine-rich repeat profile. 218 240 IPR001611 GO:0005515(InterPro)
Lcy1g1630 697 Gene3D Ribonuclease Inhibitor 82 193 IPR032675 -
Lcy1g1630 697 ProSiteProfiles Protein kinase domain profile. 390 661 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1630 697 CDD STKc_IRAK 396 661 - -
Lcy1g1630 697 Gene3D Transferase(Phosphotransferase) domain 1 468 679 - -
Lcy1g1630 697 Gene3D Ribonuclease Inhibitor 194 283 IPR032675 -
Lcy1g1630 697 SUPERFAMILY L domain-like 93 278 - -
Lcy1g1630 697 MobiDBLite consensus disorder prediction 659 697 - -
Lcy1g1630 697 Gene3D Phosphorylase Kinase; domain 1 342 465 - -
Lcy1g1630 697 MobiDBLite consensus disorder prediction 659 682 - -
Lcy1g1630 697 FunFam pollen receptor-like kinase 1 358 465 - -
Lcy1g1630 697 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515(InterPro)
Lcy1g1630 697 Pfam Leucine Rich Repeat 172 192 IPR001611 GO:0005515(InterPro)
Lcy1g1630 697 Pfam Leucine Rich Repeat 240 261 IPR001611 GO:0005515(InterPro)
Lcy1g1630 697 Pfam Leucine Rich Repeat 219 235 IPR001611 GO:0005515(InterPro)
Lcy1g1630 697 Pfam Leucine Rich Repeat 149 168 IPR001611 GO:0005515(InterPro)
Lcy1g1630 697 PANTHER OS05G0588300 PROTEIN 66 673 IPR050994 -
Lcy1g1630 697 Pfam Leucine rich repeat N-terminal domain 80 118 IPR013210 -
Lcy1g1630 697 Pfam Protein kinase domain 394 656 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1630 697 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 466 672 - -
Lcy1g1630 697 FunFam Nuclear pore complex protein NUP107 80 235 - -
Lcy1g1630 697 MobiDBLite consensus disorder prediction 342 365 - -
Lcy1g1630 697 ProSitePatterns Protein kinases ATP-binding region signature. 396 427 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1591 Lcy-Chr12:35990174 Lcy1g1630 Lcy-Chr1:16652898 1.14E-159 dispersed
Lcy1g1630 Lcy-Chr1:16652898 Lcy8g1684 Lcy-Chr8:43400948 8.86E-234 dispersed
Lcy1g1630 Lcy-Chr1:16652898 Lcy4g2143 Lcy-Chr4:47944602 9.37E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65678 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1630 - - - 0.0