Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1635 ATGCCGATGAGGAGGGTTCGTGTGTGCGTTTTTCTGCTGTCGTGTTGCTGCTCCTTGCTCCTTGCTGGTGCTGTAACCACAGAGCCATCTGATGAACCTGAACCACTTGATCTGGGAATTGAAGCATTGCTAGCAGTAAAGAGGAGCCTAATTGATCCCATGAACCGTCTTAAAAATTGGAATAATGGAGATCCTTGCGCAACTAATTGGACTGGAGTAATATGCAGCTATTCCAATGGAGCTGTTGGGAACTTACGTGTCAAAGAACTCAACCTATTGAACAAGAATCTATCTGGAAACTTAGCCCCTGAGATCAGTCAATTGTCCCAACTTGAGAAGTTAGATTTCATGTGGAATGACCTAACTGGTTCAATTCCGAAGGAGATTGGCAGTATTAGGTCGCTGAAACTCTTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCGTATTACCCAGCCTTCTTCACTTGCTTCTGGATAATAATAACTTGTCGGGTTCTCTGCCACCAGAATTTTCGACCTTGCCAAAGCTAACTATTCTAAAAGACACATTGATGAGGGTCAAGCACCAAGGAACAATATTTCTGGGTGAAATCAGTGGGAAAGGGAAAATCTCTGGGTCAAGCTTTCCTAATGGTAAAGGGAAAGGAAAGATCTCTGGGTCAAGGCAACTCGATAACAACAACTTCGAAGGAGAAATTCCAGCATCTTATGAGACGTTTTCTACATTAGTGAAATTAAGTCTCAGGAATTGCAGCTTGGAGGGACCAATTCTTAATTTTAGCAAGATTGCAGACCTCAGATACTTGGATCTTAGCTGGAACCATTTTACTGGACCCATACCACCATATGACCTCTCTTCTAAAATGACAACAATAATTTTGTCACACAACCAGCTGAATGGATCTATACCCAGCAGTTTTTCTGATCTTCCTGTCCTCCAGAGACTGTCACTTGAGAATAACTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGAAAATGTCCTTCAATTCAAGTGCTCGACTTACAATCGATCTTCGGAACAATTCGTTTTCTGGCATTTCTGGAAGCACAAACCCTCCGGCTAATGTCACCCTAAGGCTTGAAGGAAATCCAATCTGCCAAAATCTAAGCGGACAAAACTCTAACATGTTCTGTGCATCTAAAATTGTAGTGGATGGGCTGCTTAGAAGCTCAAGGAACTTCAGTGAAACATGTCCTAGAAGTTGTCCAACAGATAGTTTTTTTGAATATGTGCCAGACACTCCGGACCCATGCTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAGAGTCCAAGTTTTTCATACTTTCCTCCATACATAAATTCTTTTCAAGCGTATCTGACGCAGGAACTCAGTTTAGATAAGCATCAATTGTTGATCGATTCATACGATTGGGAAGCATCTCGCCTGAGGATGTATCTTAAGATTTTCCCGTTATTTGATAGTGCTACTGGTACTCATAGGTTGAATGACAGTGAGGAATTTCGAATTGCAGAAAAATTTATGTCATGGGATTTTACTCGTGATGACTTTTTTGGCCCATACGAGCTTCTCAACTTCACACTCCGTGGTGGTTTACAGATTGTCATTTTCCAGACAGAGAAGATGGGCATTGGTGCAGGCATCTTGGCTGCCATTATAGTTGGATCTGTTGCCTGTATTCTTTTGATCGTTGCAGTAACCATACTTCTGTTCACTAGGCATTCCAGATACCGTCACAATTCATCAAGGAAAAATTTCTCCTCAAAGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAGGAAATGCAACTGGCTACTGAAAATTTCAACTGCTCGGCTCAAGTTGGCCGAGGAGGTTATGGCAAGGTCTATAAAGGCATATTGTCAGATAATTCAGTAGTAGCCATCAAGCGTGCAGAAGAAGGATCCTTACAAGGCCAAAAAGAATTCTTGACGGAGATAGAACTCTTATCACGATTACATCACCGAAATTTAGTCTCCCTAATCGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTTTACGAGTTTATGTCAAATGGAACTTTGCGGGACTGGATTTCTGGTTTTGAATTTTCTGATAAAACTACAGTAAACCTGAATTTTCGTATGAGATTACAAATTGCACTGGGTTCAGCTAAAGGTGTGCTGTATCTCCATACTGAAGCAAATCCTCCTATATATCACCGAGACATCAAAGCTAGAAACATACTCCTTGATGCCAAGCTCACTGCCAAAGTGGCTGATTTCGGATTGTCACGTCTTGCTCCTGATCTAAATTATGAAGGGGACATTCCGGGACATATATCAACTGTTGTGAAGGGTACCCCAGGTTATCTTGATCCAGAGTACTTTTTGACCCATAAATTGACAGACAAAAGTGATGTCTATAGCCTAGGAGTTGTGTTCTTGGAGCTCTTGACGGGTATGCACCCTATTTCACACGGCAAAAACATTGTTCGTGAGGTAAAATTGTCACATCAAATGGGAACGATCCTTTCAATTGTAGACACCAGGTTGGGTTCTTTCCCGTCTGAGTGTTTAGAGAGGTTTGTTGATTTGGCCCTCAGTTGTTGCCATGACAAGCCAGAAGAGCGCCCGTCCATGCTGGTTGTGGTGAGAGAGCTGGAGAACATACTGGATATGATGCCTGATGTTAGCGGCGCATTGTACTCGGACTTATCCCCAAGATCAAGTTCCAGACTTCCATCGTCGCCGACATCGACGTCCTGCATAACCCGAGACCAGTTTGCATCGGGAAGCATTTCAGGGAGCGATCTCGTCAGTGGTGTTGTGCCAACCATCAGACCTCGCTGA 2880 42.74 MPMRRVRVCVFLLSCCCSLLLAGAVTTEPSDEPEPLDLGIEALLAVKRSLIDPMNRLKNWNNGDPCATNWTGVICSYSNGAVGNLRVKELNLLNKNLSGNLAPEISQLSQLEKLDFMWNDLTGSIPKEIGSIRSLKLFHFNNNTLSGEIPSELSVLPSLLHLLLDNNNLSGSLPPEFSTLPKLTILKDTLMRVKHQGTIFLGEISGKGKISGSSFPNGKGKGKISGSRQLDNNNFEGEIPASYETFSTLVKLSLRNCSLEGPILNFSKIADLRYLDLSWNHFTGPIPPYDLSSKMTTIILSHNQLNGSIPSSFSDLPVLQRLSLENNFLNGSVPSALWEKMSFNSSARLTIDLRNNSFSGISGSTNPPANVTLRLEGNPICQNLSGQNSNMFCASKIVVDGLLRSSRNFSETCPRSCPTDSFFEYVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYINSFQAYLTQELSLDKHQLLIDSYDWEASRLRMYLKIFPLFDSATGTHRLNDSEEFRIAEKFMSWDFTRDDFFGPYELLNFTLRGGLQIVIFQTEKMGIGAGILAAIIVGSVACILLIVAVTILLFTRHSRYRHNSSRKNFSSKIGLKIDGVKAFSFKEMQLATENFNCSAQVGRGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDWISGFEFSDKTTVNLNFRMRLQIALGSAKGVLYLHTEANPPIYHRDIKARNILLDAKLTAKVADFGLSRLAPDLNYEGDIPGHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVKLSHQMGTILSIVDTRLGSFPSECLERFVDLALSCCHDKPEERPSMLVVVRELENILDMMPDVSGALYSDLSPRSSSRLPSSPTSTSCITRDQFASGSISGSDLVSGVVPTIRPR 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16732750 16745083 + Maker00012387 Lcy1g1635 623547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1635 959 SUPERFAMILY Protein kinase-like (PK-like) 608 929 IPR011009 -
Lcy1g1635 959 FunFam Leucine-rich repeat receptor-like kinase 39 155 - -
Lcy1g1635 959 Gene3D Transferase(Phosphotransferase) domain 1 699 908 - -
Lcy1g1635 959 FunFam Leucine-rich repeat protein kinase family protein 587 698 - -
Lcy1g1635 959 PANTHER RECEPTOR-LIKE PROTEIN 55 67 898 - -
Lcy1g1635 959 Pfam Protein kinase domain 626 893 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1635 959 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524(InterPro)
Lcy1g1635 959 ProSiteProfiles Protein kinase domain profile. 623 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1635 959 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 699 912 - -
Lcy1g1635 959 SMART serkin_6 623 904 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1635 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1635 959 Pfam Leucine Rich Repeat 272 288 IPR001611 GO:0005515(InterPro)
Lcy1g1635 959 Pfam Leucine Rich Repeat 296 316 IPR001611 GO:0005515(InterPro)
Lcy1g1635 959 Pfam Leucine Rich Repeat 158 180 IPR001611 GO:0005515(InterPro)
Lcy1g1635 959 Gene3D Ribonuclease Inhibitor 223 421 IPR032675 -
Lcy1g1635 959 CDD STKc_IRAK 629 900 - -
Lcy1g1635 959 Gene3D Phosphorylase Kinase; domain 1 594 698 - -
Lcy1g1635 959 Gene3D Ribonuclease Inhibitor 39 216 IPR032675 -
Lcy1g1635 959 Pfam Leucine rich repeat N-terminal domain 41 76 IPR013210 -
Lcy1g1635 959 SUPERFAMILY L domain-like 52 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1635 Lcy-Chr1:16732750 Lcy5g0015 Lcy-Chr5:386987 5.81E-102 dispersed
Lcy1g1627 Lcy-Chr1:16630317 Lcy1g1635 Lcy-Chr1:16732750 2.96E-66 proximal
Lcy11g0010 Lcy-Chr11:87676 Lcy1g1635 Lcy-Chr1:16732750 1.04E-07 transposed
Lcy1g1635 Lcy-Chr1:16732750 Lcy11g0006 Lcy-Chr11:57262 2.75E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65679 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1635 - - - 0.0