Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1641 ATGTTGTGGGCAATTTTTTTCTCTGTTGTTGCAATGGTTATGATGGATATTATGGCGATTAGGGTTAGGCCATTCACCCGAATGGAAGCGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTGGTAGTTCGAGAAGGTTTGGAATGTTAGCTGCCTCGAATATAATTCAGGCTCCGCTTTCCGCACTGTTAGAGTATTCGGGTCTTCTTCGTGGCCGCCCAAGTCATCAAGAATCCGAGGCATTGATAAGTGCACGACTGCCTTCGGGATTTCGAGACCATCTTCGCAGCCAGATTGAAGAATCTTCTGGTGCTGCGAACGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAGCCAGAACATGGTAGGGATGGTGCTGGACTGGTAGTTGGGCAAGCGAGGGAAGTCAGCGGTCAGAATGCGGTGTCTTCGCAGTCTGTTTCGGGGTTGGCATCGTCGGAGCTTAGCCAGGGAGACCCTACTACTGAACGTGGTGCAAGAGAGGGCATTCCTCAACCGATTAATGCAGGTGCTGATGGAGATACCTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTACCAAAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTTCTTCTATTGGTGGTCTTCATTCGACAGCATTTGCAAGTAGCCAGAAAGGTTTGGATGATCATGAACTACTGCATCTTCTTTCTGGAGCAAGCATATACGCTCTTTACCTTTATTGTCAGGAGTTTCAGAGACCACAGGGAGATGAACAAGGAGTTCCTCCTCCACCTGTCGTTTCCTGACAAGGGGAGGGTGTTATGGTTTGCTGGATTTAATTGTTTTAATATTACATGTTTCCACATGTATTTCTCTGCATTTTTTTTTCTCCCTTCTGGTGTTAATATTTGCCTCCTAAACATACTTGCAGGCTTCTTTGTGACAATTTGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGAGAGAGAAAAATCTCTGTTTTAGTTGGCATTTCTCTTGCATTCACCATTCATGTCATTGGTGTCTACTGGTGGTATCAGAATGATGACCTTTTATATCCGTTGATCATGCTTCCTCCCAGAGCAATACCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTTCGTCAGGCAGTGATGGTGGTCAAGTGTATTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTCGAATATCTGCTACTACTGTACCGTGCTTTGTTGCCTACTCCCGTCTGGTATCGTTTCTTTTTGAACAAAGAGTATGGGAGTCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCCTTGAAAGCGCTGTCTCGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGTGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACGTGTCCATTGTGTAGGGCTTTAGTTAAACCTGCCGATCTCAGGTCGTTTGGCGATGGATCAACAAGTCTGTTTTTCCAGGTTTTCTAA 1752 45.09 MLWAIFFSVVAMVMMDIMAIRVRPFTRMEASGSDPDSHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRDHLRSQIEESSGAANDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSSQSVSGLASSELSQGDPTTERGAREGIPQPINAGADGDTSEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQVARKVWMIMNYCIFFLEQAYTLFTFIVRSFRDHREMNKEFLLHLSFPDKGRVLWFAGFNCFNITCFHMYFSAFFFLPSGVNICLLNILAGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVVKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16811883 16820102 + Maker00012727 Lcy1g1641 623553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1641 583 CDD RING-HC_RNFT1-like 520 560 - -
Lcy1g1641 583 SMART ring_2 522 559 IPR001841 -
Lcy1g1641 583 MobiDBLite consensus disorder prediction 146 165 - -
Lcy1g1641 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 497 570 IPR013083 -
Lcy1g1641 583 MobiDBLite consensus disorder prediction 146 198 - -
Lcy1g1641 583 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 36 583 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Lcy1g1641 583 Pfam Ring finger domain 521 560 IPR001841 -
Lcy1g1641 583 ProSitePatterns Zinc finger RING-type signature. 537 546 IPR017907 -
Lcy1g1641 583 SUPERFAMILY RING/U-box 517 565 - -
Lcy1g1641 583 ProSiteProfiles Zinc finger RING-type profile. 522 560 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1641 Lcy-Chr1:16811883 Lcy3g0532 Lcy-Chr3:20000165 2.96E-07 dispersed
Lcy7g1098 Lcy-Chr7:11831183 Lcy1g1641 Lcy-Chr1:16811883 8.15E-176 transposed
Lcy1g1641 Lcy-Chr1:16811883 Lcy11g0002 Lcy-Chr11:11182 6.58E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1641 - - - 0.0