Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1650 ATGGACAAGTACGAGAAGCTCGAAAAGGTCGGCGAAGGAACTTACGGGAAGGTCTACAAGGCCAAGGACAAGGAGACTGGCCAACTCGTTGCTCTGAAGAAAACTCGCCTCGAAATGGACGAGGAAGGTGTTCCACCGACTGCGCTTCGAGAGGTTTCTCTTCTTCAATTGCTCTCTCAGTCCCTCTATGTCGTTCGTCTTCTCTGCGTCGAGCATGTTCATCACCATAAAAGTGGTAAGCCTCTTCTCTACCTTGTCTTCGAGTATCTCGACACTGATCTCAAGAAGTACATCGATTCGCATCGCAAGGGCCCCAATCCTCGGCCTCTTCCTTCCTCCCTTGTTCAGAGTTTCCTGTTTCAGCTCTGTAAGGGCGTGGCGCATTGTCATAGCCATGGCGTTCTCCATCGTGACCTCAAGCCGCAGAATCTTCTTCTGGATCAAGGTAAGGGTGTCTTGAAGATTGCCGATCTTGGCCTTGGCCGTGCTTTTACTGTTCCTCTTAAGAGCTACACTCATGAGATTGTTACTCTCTGGTACCGTGCTCCTGAGGTTCTCCTTGGATCCACTCATTACTCCACTGCTGTCGATATGTGGTCTGTTGGTTGCATCTTCGCTGAAATGGTGAGAAGGCAGGCCCTGTTCCCGGGTGATTCTGAGTTCCAGCAGTTGCTCCACATTTTCAGGCTGCTTGGTACCCCCACCGAGAAACAGTGGCCTGGCGTTAGTTCTCTGCGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTGACACGTGCAGTTCCATCCCTGGAACCTGAGGGTGTTGACCTTCTCTCGATAACAACTTTATCTGGCTATTGTGGTGGCACCCCATGTTGCTTCAAGGTTCCATTCCTTCTTGGACCTGTTCCTCATAAGGTTGGTCCTCCGGAATATAGAACCTATTTACTTTTCGGATCACTAGAGAAAATGCTTAAATATAATCCGGCAGACAGAATCTCAGCGAAAGCAGCTTTAGACCATCCGTATTTTGACAGCCTCGACAAGTCTCAGTATTAG 1047 49.47 MDKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSSLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGVDLLSITTLSGYCGGTPCCFKVPFLLGPVPHKVGPPEYRTYLLFGSLEKMLKYNPADRISAKAALDHPYFDSLDKSQY 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16968251 16971573 - Maker00013414 Lcy1g1650 623562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1650 348 SUPERFAMILY Protein kinase-like (PK-like) 1 343 IPR011009 -
Lcy1g1650 348 PANTHER CELL DIVISION PROTEIN KINASE 3 340 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Lcy1g1650 348 ProSiteProfiles Protein kinase domain profile. 4 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1650 348 Pfam Protein kinase domain 4 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1650 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1650 348 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Lcy1g1650 348 SMART serkin_6 4 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1650 348 Gene3D Transferase(Phosphotransferase) domain 1 92 348 - -
Lcy1g1650 348 FunFam Cyclin-dependent kinase B2,2 1 91 - -
Lcy1g1650 348 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Lcy1g1650 348 FunFam Cyclin-dependent kinase 2 93 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1650 Lcy-Chr1:16968251 Lcy9g2355 Lcy-Chr9:47833661 1.05E-136 dispersed
Lcy1g1650 Lcy-Chr1:16968251 Lcy7g0070 Lcy-Chr7:687724 1.42E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65680 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1650 K07760 - csv:101204557 583.563