Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1654 ATGGCTGCCTACGCTTTGCTCGGCGACTCCTCCACCGCCCGCGTCAATGCCGGTTTCGACGATAGTCCTTTAACAAGCGCCTCCACGAACAGCAACGCCAGCGAAGAGCATAATCAACAGATCGTTCAACTTCAGGTGCAGGTTTCTCAACCGCCGCCGCGGTTGCCGGCCGGAAAAATGGTGCGGAAGAGAATCGCCTCGGAGATGGAGATCGAAGGACTCGACGCCGCCGCCGCCGTTCATCCGCGGTTTTGCCGGCGGAGTTCGGCTTCCGATCGTCCTTTTACTGGTGGAGAAAATAAGGCTAATGCGAATTATTGTTCTTCTTCAAACCCTAGCCATGGCGCTAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGTTGTAATCGAAGGGTCAAATTTATCAAATCCTCCTTCTGGTTCTGATGCTACGGCTTCTTCCACTACCTCCAACAACAACTCTTCTCTCATCGATAGTACTCTTCCTGTTCTTCGTCCTCAGCCCCACCACCACCATTTGCAGAATCCTGCAGTCTGTGGTTTCTCTGGTTTGCCTTTGTTCCCACCAGAATCTAATCACCACCATCACAGCAAGTTAAATACTCGCAATAATCCTTTTCCTCTTCCTAATCCATGTCAGGTTGTTCTTCATAATCCTCCTACTACTGCAACGACCTCCATTATCGCCGCTGCTTCTTCTCCGATGGATGATTCCTCCGCCACCGCTTGGATCGACGGTATTATCAAGGATTTAATCCATAGCTCGACTGCTATATCCATTCCTCAGCTTATTCAGAACGTTCGTGATATTATTTATCCTTGTAACCCCAATCTTGCAAACCTTCTTGAGTTTCGTCTTCGTACTTTGACGGACCCTAATGTTCCTAACTTCGCCGCCGAGGATCATCGCGTTAGGAAATCGCCCTTGTCGTTGCCGGCGCCGGTGGGCGGCTTGGGGTTGCAGCAGAGGCAGTTCAATCAAGAACATGAACAAGAACAGGATTGTTCTGGGTTGAAGCTTAACCTCGACTCTTCTTCTCTGCATAATCTTCCTAATTTCCCTCCTCAGCCGCCGTTTCACGAGCCGTATCTCCACTGGGGAGCTACTCCTCCGCCGGTCCCCACTCCCTCCGCTGCCGCTGCCGGCGAGGTTCCCGGTCACCATCAACTTAATCTCTCTTCTGTTACACCGTCTTCACTTGTTCCTCTAAACCATGTCCCTTCAAAGCAACAACCAGAACAGCAAAACTCCTGTCCGGTCAATGTGAAGGCAGCGGCGGCGGCGGTGACACAGCCACCGCCCCCGCCGCCGACGAGCAACAACCCTTCAACGACCGCTTTACTGATTAGGGAGATAAAAGAGGAGATGAGGCAACAGAAGAGAGACGAAGAAGGGTTACACCTCTTGACCTTGCTTCTTCAATGTGCAGAAGCCGTTTCTGCTGATAATTTAGAAGAAGCCAACAAGATGCTATTGGAAATCTCTGAGTTATCGACACCCTTCGGCACATCGGCGCAAAGGGTAGCGGCATATTTCTCAGAAGCAATGTCAGCCAGGCTTGTGAGCTCGTGTCTAGGCATATACGCAGCTCTGCCGCCGGCGTTGGTGCCCCATACGCACAGCCAGAAGATAGCCTCAGCCTTTCAAGTCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACTGCCAATCAAGCCATACAAGAAGCCTTCGAAAGGGAAGAGAGAGTTCACATTATAGATCTAGACATCATGCAAGGCCTTCAATGGCCTGGCCTCTTTCACATCTTGGCTTCTCGGCCAGGTGGGCCGCCGTACGTCCGCCTCACAGGGCTGGGGACCTCTCAGGAAGTGCTTGAGGCCACTGGCAAACGCCTCACTGAATTCGCCGAGAAGCTTGGCCTTCCATTTGATTTCTTTCCTGTGGCAGATAAAATCGGCAATCTGGACTTGGATAGGCTCAACGTGAGCAAAAGGGAAGCCGTTGCCGTTCATTGGATGCAGCATTCTCTTTATGAAGTCACTGGTTCTGATTCCAATACGCTATGGCTTTTGCAGAGGTTGGCCCCAAAAGTGGTGACGGTCGTCGAACAAGACCTGAGCCACACAGGCTCCTTCTTGGGGAGATTCGTAGAGGCCATTCATTACTATTCAGCACTGTTCGACTCACTGGGTGTCAGCTACGGCGAAGAGAGTGAAGAGAGGCACTTAGTGGAACAGCAACTGTTGTCAAGAGAGATCAGAAACGTGCTGGCCGTCGGAGGGCCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAGCTGCAGCAATCTGGGTTTAAGGGCATTTCTCTCGCCGGAAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTCCCTTCCGACGGGTATACGCTTGTGGAAGACAATGGGACTCTGAAGCTTGGGTGGAAGGATCTTTGCTTGCTGACGGCGTCGGCTTGGAAGCCGCCGTTTCATCATCATGCAGCTGCAGCGGCCGCCAACAACCACATTCCCCGGTACTGA 2553 51.86 MAAYALLGDSSTARVNAGFDDSPLTSASTNSNASEEHNQQIVQLQVQVSQPPPRLPAGKMVRKRIASEMEIEGLDAAAAVHPRFCRRSSASDRPFTGGENKANANYCSSSNPSHGANHSTVHNLTALTSVVIEGSNLSNPPSGSDATASSTTSNNNSSLIDSTLPVLRPQPHHHHLQNPAVCGFSGLPLFPPESNHHHHSKLNTRNNPFPLPNPCQVVLHNPPTTATTSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVRDIIYPCNPNLANLLEFRLRTLTDPNVPNFAAEDHRVRKSPLSLPAPVGGLGLQQRQFNQEHEQEQDCSGLKLNLDSSSLHNLPNFPPQPPFHEPYLHWGATPPPVPTPSAAAAGEVPGHHQLNLSSVTPSSLVPLNHVPSKQQPEQQNSCPVNVKAAAAAVTQPPPPPPTSNNPSTTALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPALVPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLDRLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHAAAAAANNHIPRY 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17031307 17035023 + Maker00012168 Lcy1g1654 623566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1654 850 ProSiteProfiles GRAS family profile. 462 831 IPR005202 -
Lcy1g1654 850 Pfam GRAS domain family 472 831 IPR005202 -
Lcy1g1654 850 MobiDBLite consensus disorder prediction 135 174 - -
Lcy1g1654 850 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 455 830 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
Lcy1g1654 850 MobiDBLite consensus disorder prediction 135 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2297 Lcy-Chr10:46598355 Lcy1g1654 Lcy-Chr1:17031307 2.38E-94 dispersed
Lcy12g0184 Lcy-Chr12:2247346 Lcy1g1654 Lcy-Chr1:17031307 7.44E-59 dispersed
Lcy1g1654 Lcy-Chr1:17031307 Lcy6g0725 Lcy-Chr6:7034276 4.81E-158 dispersed
Lcy1g1654 Lcy-Chr1:17031307 Lcy6g1910 Lcy-Chr6:40069776 6.43E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19628 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1654 K27742 - csv:101205286 1341.25