Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1656 ATGGCAGAAGCAGATCAACCAGTTGATCAAGTCGATCCTCCTCCCTTCTTTCTCTGTCCCATCTCTCTGCAAATCATGAAGGATCCCGTCACGGTCGCCTCCGGCATGACCTACGACCGGGAGAACATCGAGAGATGGTTGTTCTCCGACAAGCACAAGACGTGTCCGGTCACGCAGGTGGTCTTGTCGGACTTCGGTCTTACTCCCAACCACACTCTCCGACGTGTCATTCAAGCTTGGTGCACCGTCAATGGTGGGATCGAGAGGATTCCGACCCCGAAGGCTCCGGTCGACCGGAAGCAGGTCGTTGAGATTCTGGCGGAGGCGAAGCTGTCTCCGTTCTCTCAGCAGAATTGTCTCCGGCGTCTTCGATCCATTGCGTCGGCGAGTGAGACCAATAAACGTTGCATGGAGGCTGCCGGAGTTGTGGAGTTCTTGGTTGGAGTTGTGTGTAATTCCATCAATGTTGTTGATTCGAGCTTTGAAGATTACGCGTTTGACGACCAGTTAGCAAATTTGGGCGATGAGGCTTTGAGCATTCTTTACAAACTTCAAATCTCCGAATCCGGCCTCAAATCTCTTCTCGCCAATAATGGCGGCGTCTTCCTCACAACCCTGACCAAAATCTTGCAGAACGGCACCTACGGCTCCCGAGCGTATGCAGTAATGCTTCTTCAATCAATGTTCGAAGTCGCCGATCAGATCCAAATCCTCAGCCTAAACGCCGATTTCTTCATCGAAATCGTCCAAATTCTGAAGGATCAGATCTCGAAACAGGCTTCCAAATCGGCATTGAAACTGCTAATCGGACTCTGTTCGAGTTCCAGAAACAGAGTCAAGGCGGTCCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTCGATCTCGACTCGTCGGAGAAGCGTCTCTGCGAGATGATTCTCGTCGCGCTCGATCTGCTCTGCGGCTGCGCCGACGGCAGGGCGGAGCTGTTGAACCACGCGGCGGGGATGGCCGTCGTGTCGAAGAAGATTCTCAGAGTTTCGTCGCTCGGAAGCGAGAAGGCCGTCGGAATTTTGTGCTCCGTCGCGAGATACTCGGCGAGCCAAACCGTCGTTCAGGAAATGGTGCGGCTCGGAGTTGTGACGAAGCTCTGTTTTCTGCTTCAAGTCGTCGGCGTTGGAGCCAAAGCGAAAGAGAAGGCCAGAGAGATTCTGAAGCTCCATGGTCGGACATGGCGGAATTCTTCATGTTTGCCTTCGAGTTTGCGATCTTCTTATCCACTTTAG 1272 53.22 MAEADQPVDQVDPPPFFLCPISLQIMKDPVTVASGMTYDRENIERWLFSDKHKTCPVTQVVLSDFGLTPNHTLRRVIQAWCTVNGGIERIPTPKAPVDRKQVVEILAEAKLSPFSQQNCLRRLRSIASASETNKRCMEAAGVVEFLVGVVCNSINVVDSSFEDYAFDDQLANLGDEALSILYKLQISESGLKSLLANNGGVFLTTLTKILQNGTYGSRAYAVMLLQSMFEVADQIQILSLNADFFIEIVQILKDQISKQASKSALKLLIGLCSSSRNRVKAVQAGAVPVLIDLLLDLDSSEKRLCEMILVALDLLCGCADGRAELLNHAAGMAVVSKKILRVSSLGSEKAVGILCSVARYSASQTVVQEMVRLGVVTKLCFLLQVVGVGAKAKEKAREILKLHGRTWRNSSCLPSSLRSSYPL 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17068656 17071607 + Maker00013218 Lcy1g1656 623568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1656 423 SUPERFAMILY ARM repeat 108 384 IPR016024 -
Lcy1g1656 423 SMART Ubox_2 16 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g1656 423 PANTHER WDSAM1 PROTEIN 11 416 IPR045185 GO:0061630(InterPro)
Lcy1g1656 423 Gene3D - 99 406 IPR011989 -
Lcy1g1656 423 ProSiteProfiles U-box domain profile. 12 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g1656 423 SUPERFAMILY RING/U-box 8 85 - -
Lcy1g1656 423 CDD RING-Ubox_PUB 14 67 IPR045210 -
Lcy1g1656 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Lcy1g1656 423 Pfam U-box domain 14 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1850 Lcy-Chr11:42320158 Lcy1g1656 Lcy-Chr1:17068656 2.86E-67 dispersed
Lcy13g0543 Lcy-Chr13:6852772 Lcy1g1656 Lcy-Chr1:17068656 7.94E-59 dispersed
Lcy1g1656 Lcy-Chr1:17068656 Lcy8g2021 Lcy-Chr8:46440291 5.75E-120 dispersed
Lcy1g1656 Lcy-Chr1:17068656 Lcy5g2618 Lcy-Chr5:49001279 1.20E-151 transposed
Lcy1g1656 Lcy-Chr1:17068656 Lcy5g0496 Lcy-Chr5:5412535 1.20E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1656 - - - 0.0