Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1663 ATGCATAAGCGTTCCGGGAAGCAACAGTCGGAATCTTTGTCCAATAAGATCTACAGATTCAGAGGGGTGTTGTTGCTCACCTCTCTTTCTCTTTTCCTAATCGCCTTCGTTCTCTATCTCATGCCGGCCCGTGAGGATTACTCCTTCAACCACCGCAAAGTTTCCCCTGATCACAGGTCGTCTTCTTCTTCTTCTTCTTCTAAGACCAGTTTTGCTGTTATTTTTGATGCTGGTAGCTCTGGGAGTCGTGTCCATGTCTTTTGCTTCGATCATAATCTCGATCTCCTCCCCGTTGGCAAGGATATCGAACTTTTCGAACAACTTAAACCAGGATTGAGTGCATATGCTGACAGCCCCAAGGATGCTGCAGCTTCTCTAATTACTCTTCTGGAAAAAGCAGAAAATGTGGTTCCAAAAGGGCTGCAGCAGAGGACCCCAGTTAGAGTTGGGGCAACTGCAGGCTTGAGGGCTCTGAAGGGCGATGCATCAGATAGAATTTTGCAGGCGGTTAGGGATCTCCTAAGAGACAAAAGTGACCTCAGGTTGGAGGCAGATGCCGTGTCTGTAATTGATGGAACTCAAGAAGGTTCTTACCTTTGGGTGACATTAAATTATCTGCTTGGGAACTTGGGCAAGAAATATTCGGATACAGTTGGAGTTGTAGATCTTGGGGGAGGATCTGTTCAAATGGCATATGCTATCTCAGAAAAGGATGCTGCTCGGTTATCAGATGCAGAGGGTGCATACATAAAAAAGATGTATCTGAAGGGAGCAACTTATTATCTCTATGTTCACAGTTATTTGCATTATGGATTATTAGCTGCTCGAGCAGAGGTTTTGAGTGTTTCTGAAGATTCTAGCAATGATTGCATCCTATCTGGCTTCGAAGGAGCATACCATTACGGGGGAAAAGACTACAAAGCATCAGCCTCTTCATCTGGCTCCAGCTTGAATGGATGCCGGAGGACAGTTTTGAAGGCTCTCAAGGTTAATGAATCAACGTGTACTCACATGAAGTGCACTTTTGGTGGTGTTTGGAACGGCGGAGGAGGCGATGGGCAGAAGAATCTCTTCGTTGCTTCATTTTTCTTCGACAGGGCTGCTGAGGCTGGTTTTGTCGACCCCAATAAGCCGTTTGCTACAGCTCGACCTGCAGACTTCAATGATGCAGCAAAGCAGGCATGCCAAATCAAAGTCGAGGACACCTCTACATATCCCAACGTCGAGAAGGGTAACCTGCCGTACTTGTGTATGGATCTTGTGTATCAATACACACTACTTGTAGATGGATTCGGTAGGTTCCATTCGCATTCATGCCTGGATCCTTGGCAAAAGATCACATTGGTGAAGAAGGTTAAATATCAGAATTCCTTGGTTGAAGCAGCATGGCCTCTAGGCAGTGCCATTGAAGCTGTCTCGTCGTTAGCCTAA 1431 46.05 MHKRSGKQQSESLSNKIYRFRGVLLLTSLSLFLIAFVLYLMPAREDYSFNHRKVSPDHRSSSSSSSSKTSFAVIFDAGSSGSRVHVFCFDHNLDLLPVGKDIELFEQLKPGLSAYADSPKDAAASLITLLEKAENVVPKGLQQRTPVRVGATAGLRALKGDASDRILQAVRDLLRDKSDLRLEADAVSVIDGTQEGSYLWVTLNYLLGNLGKKYSDTVGVVDLGGGSVQMAYAISEKDAARLSDAEGAYIKKMYLKGATYYLYVHSYLHYGLLAARAEVLSVSEDSSNDCILSGFEGAYHYGGKDYKASASSSGSSLNGCRRTVLKALKVNESTCTHMKCTFGGVWNGGGGDGQKNLFVASFFFDRAAEAGFVDPNKPFATARPADFNDAAKQACQIKVEDTSTYPNVEKGNLPYLCMDLVYQYTLLVDGFGRFHSHSCLDPWQKITLVKKVKYQNSLVEAAWPLGSAIEAVSSLA 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17171582 17176979 - Maker00012440 Lcy1g1663 623575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1663 476 Gene3D Exopolyphosphatase. Domain 2 191 453 - -
Lcy1g1663 476 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 19 472 IPR000407 GO:0016787(InterPro)
Lcy1g1663 476 CDD NBD_sugar-kinase_HSP70_actin 73 253 - -
Lcy1g1663 476 FunFam Apyrase 1 191 453 - -
Lcy1g1663 476 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 190 205 IPR000407 GO:0016787(InterPro)
Lcy1g1663 476 Gene3D - 71 469 - -
Lcy1g1663 476 Pfam GDA1/CD39 (nucleoside phosphatase) family 65 474 IPR000407 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1135 Lcy-Chr1:10560182 Lcy1g1663 Lcy-Chr1:17171582 2.40E-138 dispersed
Lcy1g1136 Lcy-Chr1:10577247 Lcy1g1663 Lcy-Chr1:17171582 7.95E-151 dispersed
Lcy1g1663 Lcy-Chr1:17171582 Lcy3g0817 Lcy-Chr3:29394296 1.23E-29 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1663 K14641 - csv:101220305 833.558