Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1664 ATGATCGATGCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTGCCATGTGGATTTTCTGTGCTTCGTCTCTTGGGGTTCTCACCTCCGTCCTGTACTCCGCCGCCGGCGTTTATGGCCTTCCGCTTCATCCACTTCTCATCACTACCACTCTCGTCTTCGTTCTCGTTTTCGTTTTTAATATAGTTGGGGCTGCTTTGGGTGGGGCTAGCTTTAATCCCACTGCCACTGCGGCTTTTTATGCTGCCGGCGCTGGTCCCACCTCTCTCTTCGCCATGGCTCTCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCTCTGGCGATCAAGGAGGTGATGCCCATACAATACAAGCACATGCTTGGTGGCCCTTCTCTAAAAGTTGACATTCATACTGGAGCCACAGCTGAAGGAGTTTTGACCTTTATAATCAGTTTCGCTGTTCTTCTAATTGTACTCAGGGGTCCATCCAGCCCAGTTATTAAAACATGGTTGCTGGCAATGGCCACTGTAGCATTAATCGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCGTTTGGGTGGGCATATATGAACAACAGGCATGATACATGGGAGCAGTTGTACGTGTACTGGATCGCTCCCTTCATCGGAGCCATCTTGGCTGCTTGGCTTTTCAGAATCATCTTCCCACCACCAGCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGA 732 51.37 MIDAIKAAIGDAVLTAMWIFCASSLGVLTSVLYSAAGVYGLPLHPLLITTTLVFVLVFVFNIVGAALGGASFNPTATAAFYAAGAGPTSLFAMALRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHTGATAEGVLTFIISFAVLLIVLRGPSSPVIKTWLLAMATVALIVAGSSYTGPSMNPANAFGWAYMNNRHDTWEQLYVYWIAPFIGAILAAWLFRIIFPPPAPAPAKQKKA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17178138 17183058 - Maker00012786 Lcy1g1664 623576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1664 243 SUPERFAMILY Aquaporin-like 4 239 IPR023271 -
Lcy1g1664 243 FunFam Aquaporin SIP1-1 2 242 - -
Lcy1g1664 243 Pfam Major intrinsic protein 3 226 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1664 243 Gene3D Glycerol uptake facilitator protein. 2 238 IPR023271 -
Lcy1g1664 243 PANTHER AQUAPORIN SIP1-1 1 242 IPR044222 GO:0015250(InterPro)
Lcy1g1664 243 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1664 243 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1664 243 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1664 243 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1664 243 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1664 243 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1664 Lcy-Chr1:17178138 Lcy3g0895 Lcy-Chr3:31885171 1.19E-10 dispersed
Lcy1g1664 Lcy-Chr1:17178138 Lcy8g1900 Lcy-Chr8:45259851 1.20E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1664 K09875 - csv:101220534 406.371