Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1665 ATGAACGACTTGATGACCAAATCCTTCACCAGCTATGTGGATCTGAAGAAGGCCGCCATGAAAGACATCGACCTCGAAGCCGGTCTAGAAATGGCGTCGTCCGCTACCGACAACGGCGACATGGGTCTCTTCCTGGAAGAGGCTGAGAAGGTGAAAATGGAGATGGGTTCGATCAGAGAGATTCTGGGAAAGCTCCAGCAGGCCAATGAGGAGACTAAATCTGCTCACAAACCAGAAACTCTCAAATCGCTTCGAAATACGATTAATGTCGACATTGTCACGGTCCTGAAGAAGGCGCGGTCGATCCGATCCCAGCTCGAGGAAATGGACCGCGCCAATGCTGCCAAGAAGAGGCTCTCCGGCAGCAAAGAGGGCACTGCCATTTACAGGACCCGAATCGCGGTGACGAACGGGCTGCGAAAGAAGCTAAAGGAACTGATGATGGAGTTTCAGAGCCTAAGACAGAGGATGATGACGGAGTACAAGGAGACAGTAGGGCGACAATACTTCACGGTGACGGGAGAGCAACCGGAGGAGGAGGTGATAGAGAAGATAATATCGAACGGAGGGGAGGAGTTTTTGGGGAGGGCGATAGAGGAGCACGGGCGGGGGAAGGTGGCGGAGACGGTGGTGGAGATACAGGACCGGCACGGGGCGGCGAAGGAGATAGAGAGGAGCTTGCTGGAGCTGCACCAGGTGTTCTTGGACATGGCAGTGATGGTGGAGGCACAAGGGGAGAAAATGGATGACATTGAGCACCATGTCTTGAATGCTTCACACTATGTTAGAGATGGGACTAAGGATTTGAAGACTGCTAAGGATTTGCAAAGGAGTAGTAGGAAATGGATGTGTTTGGGGATTTTGCTTTTGCTGCTTATTGTTTTGGTTGTTGTTCTTCCAATTGTGGTTAGTTTTGGGAGTTCTTGA 927 51.46 MNDLMTKSFTSYVDLKKAAMKDIDLEAGLEMASSATDNGDMGLFLEEAEKVKMEMGSIREILGKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRQYFTVTGEQPEEEVIEKIISNGGEEFLGRAIEEHGRGKVAETVVEIQDRHGAAKEIERSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLNASHYVRDGTKDLKTAKDLQRSSRKWMCLGILLLLLIVLVVVLPIVVSFGSS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17190631 17191897 + Maker00012721 Lcy1g1665 623577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1665 308 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
Lcy1g1665 308 PANTHER SYNTAXIN 47 293 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy1g1665 308 SUPERFAMILY t-snare proteins 40 265 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy1g1665 308 ProSitePatterns Syntaxin / epimorphin family signature. 216 256 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lcy1g1665 308 Pfam SNARE domain 247 298 IPR000727 -
Lcy1g1665 308 CDD SNARE_syntaxin1-like 209 271 - -
Lcy1g1665 308 SMART tSNARE_6 205 272 IPR000727 -
Lcy1g1665 308 Pfam Syntaxin 44 245 IPR006011 GO:0016020(InterPro)
Lcy1g1665 308 CDD SynN 41 197 IPR006011 GO:0016020(InterPro)
Lcy1g1665 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Lcy1g1665 308 SMART SynN_4 36 162 IPR006011 GO:0016020(InterPro)
Lcy1g1665 308 Gene3D - 205 305 - -
Lcy1g1665 308 Gene3D - 41 168 - -
Lcy1g1665 308 FunFam Syntaxin 132 203 303 - -
Lcy1g1665 308 Coils Coil 136 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0704 Lcy-Chr1:6032015 Lcy1g1665 Lcy-Chr1:17190631 4.41E-66 dispersed
Lcy1g1665 Lcy-Chr1:17190631 Lcy5g1935 Lcy-Chr5:42182030 5.24E-86 dispersed
Lcy1g1665 Lcy-Chr1:17190631 Lcy5g0507 Lcy-Chr5:5585492 8.24E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1665 K08486 - csv:101220775 524.242