Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1665 | ATGAACGACTTGATGACCAAATCCTTCACCAGCTATGTGGATCTGAAGAAGGCCGCCATGAAAGACATCGACCTCGAAGCCGGTCTAGAAATGGCGTCGTCCGCTACCGACAACGGCGACATGGGTCTCTTCCTGGAAGAGGCTGAGAAGGTGAAAATGGAGATGGGTTCGATCAGAGAGATTCTGGGAAAGCTCCAGCAGGCCAATGAGGAGACTAAATCTGCTCACAAACCAGAAACTCTCAAATCGCTTCGAAATACGATTAATGTCGACATTGTCACGGTCCTGAAGAAGGCGCGGTCGATCCGATCCCAGCTCGAGGAAATGGACCGCGCCAATGCTGCCAAGAAGAGGCTCTCCGGCAGCAAAGAGGGCACTGCCATTTACAGGACCCGAATCGCGGTGACGAACGGGCTGCGAAAGAAGCTAAAGGAACTGATGATGGAGTTTCAGAGCCTAAGACAGAGGATGATGACGGAGTACAAGGAGACAGTAGGGCGACAATACTTCACGGTGACGGGAGAGCAACCGGAGGAGGAGGTGATAGAGAAGATAATATCGAACGGAGGGGAGGAGTTTTTGGGGAGGGCGATAGAGGAGCACGGGCGGGGGAAGGTGGCGGAGACGGTGGTGGAGATACAGGACCGGCACGGGGCGGCGAAGGAGATAGAGAGGAGCTTGCTGGAGCTGCACCAGGTGTTCTTGGACATGGCAGTGATGGTGGAGGCACAAGGGGAGAAAATGGATGACATTGAGCACCATGTCTTGAATGCTTCACACTATGTTAGAGATGGGACTAAGGATTTGAAGACTGCTAAGGATTTGCAAAGGAGTAGTAGGAAATGGATGTGTTTGGGGATTTTGCTTTTGCTGCTTATTGTTTTGGTTGTTGTTCTTCCAATTGTGGTTAGTTTTGGGAGTTCTTGA | 927 | 51.46 | MNDLMTKSFTSYVDLKKAAMKDIDLEAGLEMASSATDNGDMGLFLEEAEKVKMEMGSIREILGKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRQYFTVTGEQPEEEVIEKIISNGGEEFLGRAIEEHGRGKVAETVVEIQDRHGAAKEIERSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLNASHYVRDGTKDLKTAKDLQRSSRKWMCLGILLLLLIVLVVVLPIVVSFGSS | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17190631 | 17191897 | + | Maker00012721 | Lcy1g1665 | 623577 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1665 | 308 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 38 | 168 | - | - | |
Lcy1g1665 | 308 | PANTHER | SYNTAXIN | 47 | 293 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Lcy1g1665 | 308 | SUPERFAMILY | t-snare proteins | 40 | 265 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Lcy1g1665 | 308 | ProSitePatterns | Syntaxin / epimorphin family signature. | 216 | 256 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Lcy1g1665 | 308 | Pfam | SNARE domain | 247 | 298 | IPR000727 | - | |
Lcy1g1665 | 308 | CDD | SNARE_syntaxin1-like | 209 | 271 | - | - | |
Lcy1g1665 | 308 | SMART | tSNARE_6 | 205 | 272 | IPR000727 | - | |
Lcy1g1665 | 308 | Pfam | Syntaxin | 44 | 245 | IPR006011 | GO:0016020(InterPro) | |
Lcy1g1665 | 308 | CDD | SynN | 41 | 197 | IPR006011 | GO:0016020(InterPro) | |
Lcy1g1665 | 308 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 210 | 272 | IPR000727 | - | |
Lcy1g1665 | 308 | SMART | SynN_4 | 36 | 162 | IPR006011 | GO:0016020(InterPro) | |
Lcy1g1665 | 308 | Gene3D | - | 205 | 305 | - | - | |
Lcy1g1665 | 308 | Gene3D | - | 41 | 168 | - | - | |
Lcy1g1665 | 308 | FunFam | Syntaxin 132 | 203 | 303 | - | - | |
Lcy1g1665 | 308 | Coils | Coil | 136 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0704 | Lcy-Chr1:6032015 | Lcy1g1665 | Lcy-Chr1:17190631 | 4.41E-66 | dispersed | |
Lcy1g1665 | Lcy-Chr1:17190631 | Lcy5g1935 | Lcy-Chr5:42182030 | 5.24E-86 | dispersed | |
Lcy1g1665 | Lcy-Chr1:17190631 | Lcy5g0507 | Lcy-Chr5:5585492 | 8.24E-72 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g1665 | K08486 | - | csv:101220775 | 524.242 |