Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1725 ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTGAAGAAATTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGGAAGAAAACCCTAGTCATGGCCCTTATTAGACAGATGTTTGGAGCCAGTGCAGAGAAGGTGAAGGTGGAGAATAAAACGTGGAAAGTTGATGCTGGAACTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCACGTGGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCGAAAAACAGACCAATTGATTCCAAAGGCAAAAGAGGACATAAAGTTTTAGTTCTAAATGACGTTGACAAACTATCAAGAGAAGCCCAACACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGTTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCGACAGAGGAGCAGGTCAGGAGAGAAAATGGTTTTTTTGTAATTTATTTGGATTTAATAGCTGTTAAAGAGGTTACGTCCTTTTACCAGATTGTCAAGGTACTTGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACCGTAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTTGTTAATAATCAGGCAATACCACCAATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGTCCCAAGAGCCTGTTCCAGGTTCGTGGGAAGTTATATGAGCTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTTAAGAAACTGGATGCTGAATTAAAGCATGTGGTCTGTCATTGGGCCGCATATTATATTCTGAGAAATGATGAAACAAAGTTCTTTATGAGATCTATGGTGGATATAGAGAAAAGCAACGAAGAGAAGTATTTGAAGTGCTGTTTCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACGTTCGGCTAAAGAGAAGAAAAGTAGATAATGTTCATTCAAGAAAAGCAATTGTAAGTTGGTAG 1236 40.7 MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQVRRENGFFVIYLDLIAVKEVTSFYQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHVVCHWAAYYILRNDETKFFMRSMVDIEKSNEEKYLKCCFFCGEVHEHIQDFPHFNVRLKRRKVDNVHSRKAIVSW 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18185131 18190751 - Maker00012894 Lcy1g1725 623637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1725 411 Pfam Replication factor C subunit 3, C-terminal domain 278 345 - -
Lcy1g1725 411 Pfam RCF1/5-like, AAA+ ATPase lid domain 221 261 - -
Lcy1g1725 411 Pfam DNA polymerase III, delta subunit 18 187 - -
Lcy1g1725 411 FunFam replication factor C subunit 3 215 273 - -
Lcy1g1725 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 264 IPR027417 -
Lcy1g1725 411 SUPERFAMILY post-AAA+ oligomerization domain-like 276 347 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Lcy1g1725 411 Gene3D - 217 273 - -
Lcy1g1725 411 Gene3D - 277 366 - -
Lcy1g1725 411 Gene3D - 1 189 IPR027417 -
Lcy1g1725 411 SMART AAA_5 33 192 IPR003593 GO:0016887(InterPro)
Lcy1g1725 411 FunFam Replication factor C subunit 5 1 189 - -
Lcy1g1725 411 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 218 348 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Lcy1g1725 411 CDD AAA 19 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0703 Lcy-Chr1:6010059 Lcy1g1725 Lcy-Chr1:18185131 6.07E-51 dispersed
Lcy1g1725 Lcy-Chr1:18185131 Lcy9g1544 Lcy-Chr9:40542873 3.67E-23 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1725 K10756 - csv:101221072 593.964