Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1745 ATGGAAATTAGTCCTCCTATGTCTGTCTACTGCATTGATCTGTGTTATCTATATGTCTGTCTAGCATTCAGCTTCCTTTGGGATCCAACCACAAACTTCTCCTCCCGTACATTCTATTCGGTGAATTTAATGAAAACATTTTGTTTGTCAGACAGAAAGACAGCTCTCATTCTCTCTCTAGAGAGAGAGAGAGAGAGAAACAAAGAACTTTATAGTACCTTTGAGAACACTGAATATTCAAAATTCACAATGAAAATATTACTGCAGGGGCGTTTCAGATATCAACCAGGCCAGGTTAGAGCATTTGGGATGCTCGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAGACAAAGGTACATCTCATTTATGCCAATGTCACGTACGAGGACATTCTTTTAAAGGAGGAGTTGGATCTTCTTGCCACAAGGTACCCAGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCGGAAGAGTGGGATGGCGGTGTCGGATTCGTATCGAAGGAAATGATTCAAACCCATTGCCCTGCTCCCGCATCCGATGTTCAGATTTTAAGATGTGGGCCACCCCCAATGAACAAGGCTATGGCTGCTCATCTTGAAGCTCTTGGATATCAACCTGAGATGCTGTTCATGTTCTGA 684 42.54 MEISPPMSVYCIDLCYLYVCLAFSFLWDPTTNFSSRTFYSVNLMKTFCLSDRKTALILSLERERERNKELYSTFENTEYSKFTMKILLQGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLATRYPDSFKLYYVLNQPPEEWDGGVGFVSKEMIQTHCPAPASDVQILRCGPPPMNKAMAAHLEALGYQPEMLFMF 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18443871 18449958 - Maker00013203 Lcy1g1745 623657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1745 227 PRINTS Cytochrome B5 reductase signature 141 152 - -
Lcy1g1745 227 PRINTS Cytochrome B5 reductase signature 103 122 - -
Lcy1g1745 227 PRINTS Cytochrome B5 reductase signature 197 205 - -
Lcy1g1745 227 Gene3D - 79 227 IPR039261 -
Lcy1g1745 227 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 141 152 IPR001709 GO:0016491(InterPro)
Lcy1g1745 227 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 197 205 IPR001709 GO:0016491(InterPro)
Lcy1g1745 227 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 103 122 IPR001709 GO:0016491(InterPro)
Lcy1g1745 227 PANTHER NADH-CYTOCHROME B5 REDUCTASE 90 227 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Lcy1g1745 227 FunFam NADH-cytochrome b5 reductase 87 227 - -
Lcy1g1745 227 Pfam Oxidoreductase NAD-binding domain 104 210 IPR001433 GO:0016491(InterPro)
Lcy1g1745 227 CDD cyt_b5_reduct_like 89 227 - -
Lcy1g1745 227 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 90 226 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1745 K00326 - - csv:101212569 267.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1745 Lcy-Chr1:18443871 Lcy8g2198 Lcy-Chr8:48074655 1.25E-64 dispersed
Lcy1g1745 Lcy-Chr1:18443871 Lcy5g0764 Lcy-Chr5:11200692 3.21E-84 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0062158 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1