Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1745 ATGGAAATTAGTCCTCCTATGTCTGTCTACTGCATTGATCTGTGTTATCTATATGTCTGTCTAGCATTCAGCTTCCTTTGGGATCCAACCACAAACTTCTCCTCCCGTACATTCTATTCGGTGAATTTAATGAAAACATTTTGTTTGTCAGACAGAAAGACAGCTCTCATTCTCTCTCTAGAGAGAGAGAGAGAGAGAAACAAAGAACTTTATAGTACCTTTGAGAACACTGAATATTCAAAATTCACAATGAAAATATTACTGCAGGGGCGTTTCAGATATCAACCAGGCCAGGTTAGAGCATTTGGGATGCTCGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAGACAAAGGTACATCTCATTTATGCCAATGTCACGTACGAGGACATTCTTTTAAAGGAGGAGTTGGATCTTCTTGCCACAAGGTACCCAGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCGGAAGAGTGGGATGGCGGTGTCGGATTCGTATCGAAGGAAATGATTCAAACCCATTGCCCTGCTCCCGCATCCGATGTTCAGATTTTAAGATGTGGGCCACCCCCAATGAACAAGGCTATGGCTGCTCATCTTGAAGCTCTTGGATATCAACCTGAGATGCTGTTCATGTTCTGA 684 42.54 MEISPPMSVYCIDLCYLYVCLAFSFLWDPTTNFSSRTFYSVNLMKTFCLSDRKTALILSLERERERNKELYSTFENTEYSKFTMKILLQGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLATRYPDSFKLYYVLNQPPEEWDGGVGFVSKEMIQTHCPAPASDVQILRCGPPPMNKAMAAHLEALGYQPEMLFMF 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18443871 18449958 - Maker00013203 Lcy1g1745 623657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1745 227 PRINTS Cytochrome B5 reductase signature 141 152 - -
Lcy1g1745 227 PRINTS Cytochrome B5 reductase signature 103 122 - -
Lcy1g1745 227 PRINTS Cytochrome B5 reductase signature 197 205 - -
Lcy1g1745 227 Gene3D - 79 227 IPR039261 -
Lcy1g1745 227 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 141 152 IPR001709 GO:0016491(InterPro)
Lcy1g1745 227 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 197 205 IPR001709 GO:0016491(InterPro)
Lcy1g1745 227 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 103 122 IPR001709 GO:0016491(InterPro)
Lcy1g1745 227 PANTHER NADH-CYTOCHROME B5 REDUCTASE 90 227 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Lcy1g1745 227 FunFam NADH-cytochrome b5 reductase 87 227 - -
Lcy1g1745 227 Pfam Oxidoreductase NAD-binding domain 104 210 IPR001433 GO:0016491(InterPro)
Lcy1g1745 227 CDD cyt_b5_reduct_like 89 227 - -
Lcy1g1745 227 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 90 226 IPR039261 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1745 Lcy-Chr1:18443871 Lcy8g2198 Lcy-Chr8:48074655 1.25E-64 dispersed
Lcy1g1745 Lcy-Chr1:18443871 Lcy5g0764 Lcy-Chr5:11200692 3.21E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1745 K00326 - csv:101212569 267.7