Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1770 ATGGAAGGAAAGGGAAATGGAATTGCCAATTTTGTTGAGGGAGCTCAGCCTTACATTGCCATGATCTCCCTCCAATTTGGCTATGCTGGGATGAACATCGTCACCAAGGTCGCTCTCAACCGCGGGATGAGTCACTACGTCCTCGTCACCTATCGCCAGGCCTTTGCCACGGTTGCGCTTGCCCCATTTGCCTTCTTCCTCGAAAGGTTCTTTCTAATCGCTTTTTGTGTGCTTGGGAGTGATTTTAGTAAAAGTACTTTGACAACAAGCACTTTCATCGTTCAGAAGTACTTTCAATTCACACTCGAATATGTTTGTTTGGATTTTCTTGGCAGGAAAGTGAGACCCAAGATTAGTTTCTCTCTGTTGATGCAGATTTTCCTTCTGGGCTTGTTAGGACCAGTGATTGATCAGAACTTTTATTATGCTGGGTTGAAGCTCACATCTCCAACTTTCTCATGTGCCATGAGTAATATGCTGCCTGCAATGACATTCATTTTGGCTCTTCTTTGCAGGATGGAGAAGTTGGAAATGAAGAAAGTGAGGTGCCAAGCCAAGGTGGTGGGAACAATGGTGACAGTGGGTGGAGCCATTTTGATGACTTTATACAAAGGGAATGTCATAAGCTTCTTTTGGTCTCACCATAGTTATCTTCACTCTTCTACTCCTCCCAATTACTCCTTTGAAAGCACTCATCAAGATTGGGTCAAGGGCTCCATTCTCCTCCTTTTTGCTAATCTTGCTTGGGCTTTGTTCTTCATCCTTCAGGCAATGACATTGAGAAAGTACACAGCTCATCTTTCACTTACAACCCTAGTGTGCTTCTTGGGGACTTTGCAATCCATGGCTGTCACATTTGTAATGGAAAATAAAGCATCTGTTTGGAACATTGGATGGGACATGAATCTTCTTGCTGCTGCTTATGCTGGAATAGTTTCATCAAGCATAGCTTACTATGTCCAAGGGATGATTATGCAGAAGAGAGGCCCTGTGTTTGTCACAGCCTTTACTCCAATGATCATGATCATTGTTGCCATTATGGGCTCTTTCATGCTCTTTGAGAAGATCTACATCGGACGTGTTCTTGGAGGTGTTCTAATGGTGGTGGGGCTGTACTCAGTGCTATGGGGGAAATACAGAGATTACAAAGAAAAGGAAGCAATAGATATTCAAGAGGCCACCATTGTTGAACCAGAGAAGCTTTTATGTGAAGAAAAAGTTGAGAAGAAGAAGAAGAAATTGGCAACAGTAGTTGAAGAAGAAGAAGAAGAAGAAACGACAACAAGATCATTAAACGACATCGAAATGCAGAGGAACGACACAACATCAAATGTCGGCAATAATGTTACAAAATTGCCATGTCCTCCACCACCCATTATTGTTGTAATTGCTGTGGATGAAGCACCATCAAAAGTTTGA 1419 42.64 MEGKGNGIANFVEGAQPYIAMISLQFGYAGMNIVTKVALNRGMSHYVLVTYRQAFATVALAPFAFFLERFFLIAFCVLGSDFSKSTLTTSTFIVQKYFQFTLEYVCLDFLGRKVRPKISFSLLMQIFLLGLLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFILALLCRMEKLEMKKVRCQAKVVGTMVTVGGAILMTLYKGNVISFFWSHHSYLHSSTPPNYSFESTHQDWVKGSILLLFANLAWALFFILQAMTLRKYTAHLSLTTLVCFLGTLQSMAVTFVMENKASVWNIGWDMNLLAAAYAGIVSSSIAYYVQGMIMQKRGPVFVTAFTPMIMIIVAIMGSFMLFEKIYIGRVLGGVLMVVGLYSVLWGKYRDYKEKEAIDIQEATIVEPEKLLCEEKVEKKKKKLATVVEEEEEEETTTRSLNDIEMQRNDTTSNVGNNVTKLPCPPPPIIVVIAVDEAPSKV 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18852906 18856021 - Maker00013327 Lcy1g1770 623682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1770 472 Coils Coil 404 424 - -
Lcy1g1770 472 Pfam EamA-like transporter family 237 375 IPR000620 GO:0016020(InterPro)
Lcy1g1770 472 PANTHER WAT1-RELATED PROTEIN 19 397 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy1g1770 472 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1770 Lcy-Chr1:18852906 Lcy7g0734 Lcy-Chr7:7054917 1.08E-147 dispersed
Lcy1g1770 Lcy-Chr1:18852906 Lcy5g0821 Lcy-Chr5:12921925 1.87E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1770 - - - 0.0