Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1774 ATGAGGGAAGAACAGTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCTTCGCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATACCAGTCCGCCGTTGCCTTGCCCGTCTCCGCCGCTTTCGAATCCCCTGCCCGGCTCCGGCAACGGAATTGCGCCGCCCAACTCGGCGGATTTCGGCGATTCCGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGGCCGCGCCTAGTCTGGACTCCTCAGCTCCACAAGCGGTTTGTTGACGCCGTTGCCCATTTGGGGATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGTCTCTATCTCAAGCGGATGCAGGGCTTGTCCGGTGGCGGCGGCGGCGGCGGCGCCGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCTGCTCGTGCCAGTTCTGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCATCATCACCAGCAGCAGATGGCTGCTGCTGCTGCCGTGGTCGCCCACCCGCAGCTCCAGCCGCCGTATCATCGGCAGGTCGGGCATTTCGGGTCGCCGCCGAACGGGCAGTTTGAGCATCCATTTTTAGCTAGACAGTCACAGCCTATCCATAGAATGGGGGCACCAGTGCATAATTCAGTTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTCCTTACCTTATTTCCTACTGGGGATGATTGA 909 56.88 MREEQSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGAGGLVASSDPATDHLFASSPVPPHLLHSARASSDHFLPFVPMATLQQHHHHQQQMAAAAAVVAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIEDLESANASGGRKVLTLFPTGDD 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18927251 18928159 - Maker00012879 Lcy1g1774 623686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1774 302 MobiDBLite consensus disorder prediction 36 91 - -
Lcy1g1774 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Lcy1g1774 302 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 262 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1774 302 MobiDBLite consensus disorder prediction 1 18 - -
Lcy1g1774 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Lcy1g1774 302 FunFam Two-component response regulator 93 156 - -
Lcy1g1774 302 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Lcy1g1774 302 Gene3D - 94 156 - -
Lcy1g1774 302 MobiDBLite consensus disorder prediction 46 60 - -
Lcy1g1774 302 MobiDBLite consensus disorder prediction 1 24 - -
Lcy1g1774 302 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1774 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1774 Lcy-Chr1:18927251 Lcy6g0193 Lcy-Chr6:1759863 5.28E-18 dispersed
Lcy11g0162 Lcy-Chr11:1769507 Lcy1g1774 Lcy-Chr1:18927251 1.14E-44 transposed
Lcy1g1774 Lcy-Chr1:18927251 Lcy10g0975 Lcy-Chr10:31313088 2.99E-13 wgd
Lcy1g1774 Lcy-Chr1:18927251 Lcy5g0800 Lcy-Chr5:12320914 3.04E-136 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy12g0279 . 1 190 G2-like Transcription Factor Family AT5G16560 56.1 6.7e-42 169.1
Lcy12g1970 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 5.7e-41 166.0
Lcy12g1970 . 196 389 G2-like Transcription Factor Family AT4G17695 50.3 1.5e-36 151.0
Lcy13g2020 . 8 151 G2-like Transcription Factor Family AT5G42630 64.2 2.2e-42 169.9
Lcy9g2153 . 10 182 G2-like Transcription Factor Family AT5G42630 58.2 1.1e-41 167.5
Lcy10g0975 . 20 261 G2-like Transcription Factor Family AT1G25550 56.3 1.8e-54 210.3
Lcy7g0438 . 193 434 G2-like Transcription Factor Family AT1G25550 50.2 5.8e-53 205.3
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT5G05090 57.0 2.0e-74 276.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT5G05090 57.5 5.3e-72 268.5
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy8g1657 . 1 333 G2-like Transcription Factor Family AT1G79430 55.8 2.3e-78 290.0
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT3G10760 62.6 1.7e-91 333.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT3G10760 58.8 2.5e-87 319.7
Lcy1g1774 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.5e-60 230.3
Lcy12g2089 . 243 460 G2-like Transcription Factor Family AT2G20400 50.2 1.1e-44 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19634 None None None None Lcy TF