Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1774 ATGAGGGAAGAACAGTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCTTCGCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATACCAGTCCGCCGTTGCCTTGCCCGTCTCCGCCGCTTTCGAATCCCCTGCCCGGCTCCGGCAACGGAATTGCGCCGCCCAACTCGGCGGATTTCGGCGATTCCGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGGCCGCGCCTAGTCTGGACTCCTCAGCTCCACAAGCGGTTTGTTGACGCCGTTGCCCATTTGGGGATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGTCTCTATCTCAAGCGGATGCAGGGCTTGTCCGGTGGCGGCGGCGGCGGCGGCGCCGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCTGCTCGTGCCAGTTCTGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCATCATCACCAGCAGCAGATGGCTGCTGCTGCTGCCGTGGTCGCCCACCCGCAGCTCCAGCCGCCGTATCATCGGCAGGTCGGGCATTTCGGGTCGCCGCCGAACGGGCAGTTTGAGCATCCATTTTTAGCTAGACAGTCACAGCCTATCCATAGAATGGGGGCACCAGTGCATAATTCAGTTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTCCTTACCTTATTTCCTACTGGGGATGATTGA 909 56.88 MREEQSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGAGGLVASSDPATDHLFASSPVPPHLLHSARASSDHFLPFVPMATLQQHHHHQQQMAAAAAVVAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIEDLESANASGGRKVLTLFPTGDD 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18927251 18928159 - Maker00012879 Lcy1g1774 623686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1774 302 MobiDBLite consensus disorder prediction 36 91 - -
Lcy1g1774 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Lcy1g1774 302 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 262 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g1774 302 MobiDBLite consensus disorder prediction 1 18 - -
Lcy1g1774 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Lcy1g1774 302 FunFam Two-component response regulator 93 156 - -
Lcy1g1774 302 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Lcy1g1774 302 Gene3D - 94 156 - -
Lcy1g1774 302 MobiDBLite consensus disorder prediction 46 60 - -
Lcy1g1774 302 MobiDBLite consensus disorder prediction 1 24 - -
Lcy1g1774 302 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1774 Lcy-Chr1:18927251 Lcy6g0193 Lcy-Chr6:1759863 5.28E-18 dispersed
Lcy11g0162 Lcy-Chr11:1769507 Lcy1g1774 Lcy-Chr1:18927251 1.14E-44 transposed
Lcy1g1774 Lcy-Chr1:18927251 Lcy10g0975 Lcy-Chr10:31313088 2.99E-13 wgd
Lcy1g1774 Lcy-Chr1:18927251 Lcy5g0800 Lcy-Chr5:12320914 3.04E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19634 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1774 - - - 0.0