Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1775 ATGGCTTCAAGACCAGTTGTTCCCCAACAAATCAGAGGTGAGGCGGCGATCGGCGGAGGAAAGCATGCGAAAGCCGGGGTGGCGGTGGATGCGAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAACAAGTGCCTGTTAGTGTGGATGGGGCTGCTCCCATTCTTGATGGTGGTGTTGTGCCTGTTAAGAAAGCAGTAGCAGCTCCCAAGCCAGCACCCAAGAAAGTCGTTGCTAAACCGAAAGTCGAGGTGATCGAGATAAGCCCGGATACCGTCGAACAAGGTCGGGGCAAGGAAGTCAAATTTGCAAACAAGAAAAAGGAAGGAGAAGGGGTCTCAAAGAAGAAAGCTCAGACTCTCACTTCAGTCCTGACTGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCCAAAGAGCAGATTTTTGACATTGATGCTGCAGATGCTGGTAATGAGTTGGCAGCAGTTGAGTATGTTGAGGACATTTACAAGTTCTATAAGGAAGTTGAGAATGAGAACAGACCTCATGATTATATGGATTCACAACCTGAGATAAACACTTCAATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAGTTCGAGCTTTCGCCCGAAACTTTCTACCTCACGATCAACATAATCGATCGATTCCTTGCGACGAAGGTGGTTCCGAGAAGGGAATTGCAATTGGTGGGCATTGGGGCAATGCTCATAGCTTCCAAATACGAAGAAATCTGGGCGCCAGAGGTAAATGACTTTGTGTGCCTTTCAGATAGAGCATACAGTCATGAACAGATACTAGTGATGGAGAAAAAGATACTTGGCAAGTTAGAATGGACGTTGACTTTGCCTACACCGTATGTTTTCCTCGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATGTGGTTTATTTTCTGGCTGAACTTGGCATAATGCATTACAACACGAGTATAATGTACTGCCCGTCGATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAGCCCCAGCTTGGGATGACACTCTGAAACTGCACACTGGTTTCTCAGAGCCTCAACTAATTGATTGTGCCAAGCTTCTGGTGGGATTCCATGGGGCAGCAAGCAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCTGAATGGTGGTGTCCATTGA 1374 47.96 MASRPVVPQQIRGEAAIGGGKHAKAGVAVDARNRRALGDIGNLVTVRGIDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVSVDGAAPILDGGVVPVKKAVAAPKPAPKKVVAKPKVEVIEISPDTVEQGRGKEVKFANKKKEGEGVSKKKAQTLTSVLTARSKAACGVTKKPKEQIFDIDAADAGNELAAVEYVEDIYKFYKEVENENRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKVVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYSHEQILVMEKKILGKLEWTLTLPTPYVFLARFIKASKDSDHEMENVVYFLAELGIMHYNTSIMYCPSMIAASAVYAARCTLKKAPAWDDTLKLHTGFSEPQLIDCAKLLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPAKALLALNGGVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18946357 18948890 - Maker00012145 Lcy1g1775 623687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1775 457 SUPERFAMILY Cyclin-like 328 448 IPR036915 -
Lcy1g1775 457 PIRSF Cyclin_A_B_D_E 1 455 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lcy1g1775 457 Pfam Cyclin, N-terminal domain 200 324 IPR006671 -
Lcy1g1775 457 Gene3D - 200 441 - -
Lcy1g1775 457 CDD CYCLIN_AtCycB-like_rpt2 327 445 - -
Lcy1g1775 457 PANTHER CYCLINS 175 433 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy1g1775 457 SMART Cyclin_C_2 327 446 IPR004367 -
Lcy1g1775 457 FunFam G2/mitotic-specific cyclin-1 315 441 - -
Lcy1g1775 457 ProSitePatterns Cyclins signature. 229 260 IPR048258 -
Lcy1g1775 457 Pfam Cyclin, C-terminal domain 327 445 IPR004367 -
Lcy1g1775 457 CDD CYCLIN_AtCycB-like_rpt1 177 322 - -
Lcy1g1775 457 SMART cyclin_7 331 415 IPR013763 -
Lcy1g1775 457 SMART cyclin_7 234 318 IPR013763 -
Lcy1g1775 457 Gene3D - 214 325 - -
Lcy1g1775 457 SUPERFAMILY Cyclin-like 190 324 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0554 Lcy-Chr1:4776623 Lcy1g1775 Lcy-Chr1:18946357 1.88E-75 dispersed
Lcy1g1775 Lcy-Chr1:18946357 Lcy8g2036 Lcy-Chr8:46611979 3.30E-120 dispersed
Lcy1g1775 Lcy-Chr1:18946357 Lcy9g2319 Lcy-Chr9:47549657 2.40E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1775 K21777 - csv:101217210 731.865