Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1775 | ATGGCTTCAAGACCAGTTGTTCCCCAACAAATCAGAGGTGAGGCGGCGATCGGCGGAGGAAAGCATGCGAAAGCCGGGGTGGCGGTGGATGCGAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAACAAGTGCCTGTTAGTGTGGATGGGGCTGCTCCCATTCTTGATGGTGGTGTTGTGCCTGTTAAGAAAGCAGTAGCAGCTCCCAAGCCAGCACCCAAGAAAGTCGTTGCTAAACCGAAAGTCGAGGTGATCGAGATAAGCCCGGATACCGTCGAACAAGGTCGGGGCAAGGAAGTCAAATTTGCAAACAAGAAAAAGGAAGGAGAAGGGGTCTCAAAGAAGAAAGCTCAGACTCTCACTTCAGTCCTGACTGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCCAAAGAGCAGATTTTTGACATTGATGCTGCAGATGCTGGTAATGAGTTGGCAGCAGTTGAGTATGTTGAGGACATTTACAAGTTCTATAAGGAAGTTGAGAATGAGAACAGACCTCATGATTATATGGATTCACAACCTGAGATAAACACTTCAATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAGTTCGAGCTTTCGCCCGAAACTTTCTACCTCACGATCAACATAATCGATCGATTCCTTGCGACGAAGGTGGTTCCGAGAAGGGAATTGCAATTGGTGGGCATTGGGGCAATGCTCATAGCTTCCAAATACGAAGAAATCTGGGCGCCAGAGGTAAATGACTTTGTGTGCCTTTCAGATAGAGCATACAGTCATGAACAGATACTAGTGATGGAGAAAAAGATACTTGGCAAGTTAGAATGGACGTTGACTTTGCCTACACCGTATGTTTTCCTCGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATGTGGTTTATTTTCTGGCTGAACTTGGCATAATGCATTACAACACGAGTATAATGTACTGCCCGTCGATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAGCCCCAGCTTGGGATGACACTCTGAAACTGCACACTGGTTTCTCAGAGCCTCAACTAATTGATTGTGCCAAGCTTCTGGTGGGATTCCATGGGGCAGCAAGCAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCTGAATGGTGGTGTCCATTGA | 1374 | 47.96 | MASRPVVPQQIRGEAAIGGGKHAKAGVAVDARNRRALGDIGNLVTVRGIDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVSVDGAAPILDGGVVPVKKAVAAPKPAPKKVVAKPKVEVIEISPDTVEQGRGKEVKFANKKKEGEGVSKKKAQTLTSVLTARSKAACGVTKKPKEQIFDIDAADAGNELAAVEYVEDIYKFYKEVENENRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKVVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYSHEQILVMEKKILGKLEWTLTLPTPYVFLARFIKASKDSDHEMENVVYFLAELGIMHYNTSIMYCPSMIAASAVYAARCTLKKAPAWDDTLKLHTGFSEPQLIDCAKLLVGFHGAASKNKLQVIYRKYSSSERGAVALLQPAKALLALNGGVH | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 18946357 | 18948890 | - | Maker00012145 | Lcy1g1775 | 623687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1775 | 457 | SUPERFAMILY | Cyclin-like | 328 | 448 | IPR036915 | - | |
Lcy1g1775 | 457 | PIRSF | Cyclin_A_B_D_E | 1 | 455 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Lcy1g1775 | 457 | Pfam | Cyclin, N-terminal domain | 200 | 324 | IPR006671 | - | |
Lcy1g1775 | 457 | Gene3D | - | 200 | 441 | - | - | |
Lcy1g1775 | 457 | CDD | CYCLIN_AtCycB-like_rpt2 | 327 | 445 | - | - | |
Lcy1g1775 | 457 | PANTHER | CYCLINS | 175 | 433 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Lcy1g1775 | 457 | SMART | Cyclin_C_2 | 327 | 446 | IPR004367 | - | |
Lcy1g1775 | 457 | FunFam | G2/mitotic-specific cyclin-1 | 315 | 441 | - | - | |
Lcy1g1775 | 457 | ProSitePatterns | Cyclins signature. | 229 | 260 | IPR048258 | - | |
Lcy1g1775 | 457 | Pfam | Cyclin, C-terminal domain | 327 | 445 | IPR004367 | - | |
Lcy1g1775 | 457 | CDD | CYCLIN_AtCycB-like_rpt1 | 177 | 322 | - | - | |
Lcy1g1775 | 457 | SMART | cyclin_7 | 331 | 415 | IPR013763 | - | |
Lcy1g1775 | 457 | SMART | cyclin_7 | 234 | 318 | IPR013763 | - | |
Lcy1g1775 | 457 | Gene3D | - | 214 | 325 | - | - | |
Lcy1g1775 | 457 | SUPERFAMILY | Cyclin-like | 190 | 324 | IPR036915 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0554 | Lcy-Chr1:4776623 | Lcy1g1775 | Lcy-Chr1:18946357 | 1.88E-75 | dispersed | |
Lcy1g1775 | Lcy-Chr1:18946357 | Lcy8g2036 | Lcy-Chr8:46611979 | 3.30E-120 | dispersed | |
Lcy1g1775 | Lcy-Chr1:18946357 | Lcy9g2319 | Lcy-Chr9:47549657 | 2.40E-83 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g1775 | K21777 | - | csv:101217210 | 731.865 |