Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1833 | ATGGGATCTTCTGTTGCTGCAATGGGAATGGTTTCCGAGTCCAAATTCCATGTTCTTGCTGTTGATGACAGCATCATCGATAGGAAATTGATTGAAAGGCTTCTTAAGACCTCCTCTTATCAAGTCACTACGGTTGATTCTGGGAGTAAGGCTTTGGAGTTTTTGGGGTATGACCCTGGAAATAACTCGATTCCATCTGTTTCGCCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGGGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTAAAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCCGATGTCAACAGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAGAACAGAAGAAGATGAGCCTAATTCAGGAAGCCAATCCCAAGCACTAGAGCAGCAGCAGCAGCAACAACAACAACGACATCAACAAGAACAATTACGACCGCTACCGCAGCAGGTTCCTACCCCGCTGCAAGATCAAGATCGATTGCAATCCGTACCACTGCTGCCAACGCCGCAACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCGCAGCAATCGAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCACCAGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG | 804 | 44.65 | MGSSVAAMGMVSESKFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSPNHHHHHQEVDVNLVITDYCMPGMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKPERTEEDEPNSGSQSQALEQQQQQQQQRHQQEQLRPLPQQVPTPLQDQDRLQSVPLLPTPQQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 20351997 | 20354148 | + | Maker00013164 | Lcy1g1833 | 623745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1833 | 267 | MobiDBLite | consensus disorder prediction | 156 | 170 | - | - | |
Lcy1g1833 | 267 | Pfam | Response regulator receiver domain | 74 | 144 | IPR001789 | GO:0000160(InterPro) | |
Lcy1g1833 | 267 | CDD | REC_typeA_ARR | 18 | 148 | - | - | |
Lcy1g1833 | 267 | ProSiteProfiles | Response regulatory domain profile. | 17 | 153 | IPR001789 | GO:0000160(InterPro) | |
Lcy1g1833 | 267 | MobiDBLite | consensus disorder prediction | 218 | 267 | - | - | |
Lcy1g1833 | 267 | SUPERFAMILY | CheY-like | 14 | 155 | IPR011006 | - | |
Lcy1g1833 | 267 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 12 | 214 | IPR045279 | GO:0009736(InterPro) | |
Lcy1g1833 | 267 | MobiDBLite | consensus disorder prediction | 171 | 195 | - | - | |
Lcy1g1833 | 267 | SMART | REC_2 | 16 | 149 | IPR001789 | GO:0000160(InterPro) | |
Lcy1g1833 | 267 | Gene3D | - | 17 | 252 | - | - | |
Lcy1g1833 | 267 | Coils | Coil | 176 | 196 | - | - | |
Lcy1g1833 | 267 | MobiDBLite | consensus disorder prediction | 218 | 246 | - | - | |
Lcy1g1833 | 267 | MobiDBLite | consensus disorder prediction | 156 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1833 | Lcy-Chr1:20351997 | Lcy7g0695 | Lcy-Chr7:6447304 | 4.37E-62 | dispersed | |
Lcy5g0961 | Lcy-Chr5:17041208 | Lcy1g1833 | Lcy-Chr1:20351997 | 5.18E-74 | transposed | |
Lcy7g1085 | Lcy-Chr7:11632265 | Lcy1g1833 | Lcy-Chr1:20351997 | 1.48E-25 | transposed | |
Lcy1g1833 | Lcy-Chr1:20351997 | Lcy10g1007 | Lcy-Chr10:32101321 | 2.13E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19638 | None | None | None | None | Lcy | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g1833 | K14492 | - | csv:101220999 | 415.231 |