Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1833 ATGGGATCTTCTGTTGCTGCAATGGGAATGGTTTCCGAGTCCAAATTCCATGTTCTTGCTGTTGATGACAGCATCATCGATAGGAAATTGATTGAAAGGCTTCTTAAGACCTCCTCTTATCAAGTCACTACGGTTGATTCTGGGAGTAAGGCTTTGGAGTTTTTGGGGTATGACCCTGGAAATAACTCGATTCCATCTGTTTCGCCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGGGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTAAAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCCGATGTCAACAGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAGAACAGAAGAAGATGAGCCTAATTCAGGAAGCCAATCCCAAGCACTAGAGCAGCAGCAGCAGCAACAACAACAACGACATCAACAAGAACAATTACGACCGCTACCGCAGCAGGTTCCTACCCCGCTGCAAGATCAAGATCGATTGCAATCCGTACCACTGCTGCCAACGCCGCAACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCGCAGCAATCGAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCACCAGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 804 44.65 MGSSVAAMGMVSESKFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSPNHHHHHQEVDVNLVITDYCMPGMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDKPERTEEDEPNSGSQSQALEQQQQQQQQRHQQEQLRPLPQQVPTPLQDQDRLQSVPLLPTPQQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20351997 20354148 + Maker00013164 Lcy1g1833 623745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1833 267 MobiDBLite consensus disorder prediction 156 170 - -
Lcy1g1833 267 Pfam Response regulator receiver domain 74 144 IPR001789 GO:0000160(InterPro)
Lcy1g1833 267 CDD REC_typeA_ARR 18 148 - -
Lcy1g1833 267 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160(InterPro)
Lcy1g1833 267 MobiDBLite consensus disorder prediction 218 267 - -
Lcy1g1833 267 SUPERFAMILY CheY-like 14 155 IPR011006 -
Lcy1g1833 267 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 214 IPR045279 GO:0009736(InterPro)
Lcy1g1833 267 MobiDBLite consensus disorder prediction 171 195 - -
Lcy1g1833 267 SMART REC_2 16 149 IPR001789 GO:0000160(InterPro)
Lcy1g1833 267 Gene3D - 17 252 - -
Lcy1g1833 267 Coils Coil 176 196 - -
Lcy1g1833 267 MobiDBLite consensus disorder prediction 218 246 - -
Lcy1g1833 267 MobiDBLite consensus disorder prediction 156 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1833 Lcy-Chr1:20351997 Lcy7g0695 Lcy-Chr7:6447304 4.37E-62 dispersed
Lcy5g0961 Lcy-Chr5:17041208 Lcy1g1833 Lcy-Chr1:20351997 5.18E-74 transposed
Lcy7g1085 Lcy-Chr7:11632265 Lcy1g1833 Lcy-Chr1:20351997 1.48E-25 transposed
Lcy1g1833 Lcy-Chr1:20351997 Lcy10g1007 Lcy-Chr10:32101321 2.13E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19638 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1833 K14492 - csv:101220999 415.231