Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1873 ATGGCGGATTACGATCTAACTCCCCGAATCGCTCCGAATTTGGATCGTCACCTTGTCTTCCCTCTCCTTGAGTTCCTTCAGGAGAGGCAGCTTTACCCCGATGAGCAGATCCTCAAGGCCAAAATCGAGCTCCTCAACAAAACCAATATGGTTGATTACGCCATGGACATCCACAAGTCGCTGTACCACACTGACGATGTTCCTCAAGGCATGGGCAGCTCTCATATGGTGGATAGAAGGGCGGAAGTGGTGGCGAGGCTTAAGGCTTTGGAGGAGTCTGCGGCGCCACTTGTTGCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGAGCTGATAAGCAGTACAATCTTCAGATGCTTAATGATCGCTATCAGAATTTCTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATCTTTTTCAATCACGACAATGGGAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATCTAAATGCCATTCAAACCAATGCTCCCCATCTTTTACGCTATTTGGCCACTGCATTCATTGTTAACAAAAGGCGGAGGCCACAATTTAAAGATTTTATCAAGGTTATTCAGCAAGAACAGTATTCCTATAAGGATCCTATCACAGAGTTCTTGACTTGTGTGTATGTCAATTATGATTTTGATGGGGCACAAAAGAAGATGAGGGAGTGTGAAGAATTATCTTGTTTTATTATTATATATCACCTGCTGGTATCTTGTGGCAGTGTCCTTGCCGAGAAGTTGAACTTGAATTATGAGGAAGCTGAGAGGTGGATTGTTAATCTTGTACGGACCTCAAAGCTTGATGCCAAGATTGATTCAAAGACGGGAACGGTTATAATGGAACCGAACCAGCCTAATGTGTATGAACAACTGATAGACCACACAAAGTCATTATCTGGGCGTACTTACAAGTTAGTGACTCAACTTCTAGAGCATACACAGGCTCAGGCAACTAGATAA 1005 43.38 MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQGMGSSHMVDRRAEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQYSYKDPITEFLTCVYVNYDFDGAQKKMRECEELSCFIIIYHLLVSCGSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEQLIDHTKSLSGRTYKLVTQLLEHTQAQATR 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21341675 21345525 - Maker00012984 Lcy1g1873 623785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1873 334 CDD eIF3E 4 326 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy1g1873 334 Pfam eIF3 subunit 6 N terminal domain 5 126 IPR019010 -
Lcy1g1873 334 Pfam Eukaryotic translation initiation factor 3 subunit E, C-terminal 301 321 - -
Lcy1g1873 334 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 126 331 IPR016650 GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)
Lcy1g1873 334 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 326 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy1g1873 334 SMART eIF3_N_2 5 129 IPR019010 -
Lcy1g1873 334 Pfam PCI domain 257 296 IPR000717 -
Lcy1g1873 334 SUPERFAMILY Winged helix DNA-binding domain 256 301 IPR036390 -
Lcy1g1873 334 PIRSF Transl_init_eIF3e 1 128 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy1g1873 334 PIRSF Transl_init_eIF3e 117 244 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy1g1873 334 PIRSF Transl_init_eIF3e 244 334 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1873 K03250 - csv:101205199 362.459