Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1936 ATGGCCTTTTTGTGTTGTTATCTCTTCATTTTGTTTGCTGGGTTTCTTTCAAATTCCCAGTTTTTGGGAGCTGAGCTTGATGATCAAATCACCATGTCCTCCATTAGAGAGGAGCTTCAAGTTCCTGGATGGAGCTCCAACATCTCAGATTACTGTTCTTGGAAAGGTGTCCACTGTGGATTGAATCATTCCATGGTTGAAACTCTTGATCTTTCTGGTCATTCTCTGAGAGGTAATCTAACTCTGATTGCTGAGCTCAAAGCTTTGAAATGGCTTGACCTGTCCTACAATGACTTCCACGGCGAAATTCCGTCGATCTTCGCAAACTTATCCGAGCTCGAATTCCTTGATTTGTCTGCAAACAAGTTTGATGGTTTGATCCCGGCCCAGCTTGGTGGTCTCAAGAATCTCAAGTCATTGAACCTTTCTAATAATCAGCTGGTGGGAGAAATTCCAGATGAGCTTCAAGGCTTAGAGAAGTTGCAGGATTTTCAAGTTTCTAGCAACAGGTTGAATGGTTCAATTCCAAGCTGGATTGGAAATTTGACTCATCTCAGAGTTTTTACAGCCTATGAGAATGACTTTGGTGGTGTAATTCCTGATAATCTCGGCTCGGTTTCAGACCTCCGAGTGTTGAATCTGCATACCAACAAGCTCGAAGGCCCGATTCCCCGAAGCATTTTCGCTTCGGGGAAGCTGGAGATCTTGGTTCTGACACAAAACAGATTGAATGGCAATCTCCCTGAAGAGATTGGGAACTGCAAAAGCCTTACCAGCATTCGAATTGGGAACAATGAGCTTGTTGGTGTGATTCCTCCAGCCATTGGAAATGTTAGTAGCCTTGCTTACTTTGAAGTTGATAACAATCACCTTTCGGGCGATATAGCTTCTCAGATTTCACAGTGTTCTAATCTTACTTTGCTGAATCTAGCCTCCAATGGATTCACCGGGACGATTCCTCCCGAGCTTGGAGAGCTGATGAACCTCCAGGAACTTATTCTTTCTGGTAACAGCCTGTATGGTGATATCCCGAGATCGATGCTCGAATGCAAGAATCTCAACAAGCTTGATTTAAGCAGCAATAGATTTAATGGCACTATTCCTTCTGATATCTGCAATATATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATAAAAGGAGAGATACCTAATGAGATTGGAAAATGTACAAAGCTTCTTGACCTGAGACTCGGAAGTAACTATTTAACTGGAAGCATCCCGTCCGAGATCGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAACCATCTAAATGGACCAGTGCCTCCTGAGTTGGGGAAACTTGATAAACTGGTTTCTTTAGATTTATCGAACAATCATCTCTCGGGCGATATCCCTTCCGAACTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCAAATAATCTGTTTACTGGTTCAATTCCATTTTTTGTTCCATTCCAGAAAAGTGCAAATTCCAGTTTTCTGGGGAACGATGGCCTTTGCGGGGCGCCACTAAGCATTTCGTGTAAAAATTCAATTGGTTCATACAATCAAGATTACCATCACAAGGTCTCATACAAGATCATACTGGCTGTCATCGGTTCTGGGCTAGCAGTTTTTGTATCGGTTACTATCGTTGTTCTGCTGTTTGTGATGAAAGAAAAGCAGGAAAAGGCAGCAAAATCTACAGGCACTGCTGATGATGCAACTATCAACGATCAACCAACGATAATAGCAGGGAATGTCTTCGACGATAATCTCCGACAGGAAATAGATCTCGATTCGGTCGTCAAAGCAACATTGAAGGATTCAAACAAGCTCATCTTTGGCACTTTCAGTACCGTTTACAAGGCGGTTATGCCTTCGGGTATGATCATATCAGTTAAGAGACTAAAATCCATGGATAAGACAATCATTCATCATCAAAGCAAGATGATCAGAGAGCTTGAAAGGCTTGGCAAACTGAACCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAAGATGTAGCTCTATTGCTTCATCATTACTTACCCAATGGATCATTGGCTCAGCTTCTTCATGAGTCCACAAAACAACCTGAATATGAACCTGATTGGCCCACAAGATTTTCAATTGCCATTGGAGCAGCAGAAGGGCTAGCTTTCCTTCATCATGTGGCCATAATCCATCTTGATATTTCATCATCTAATGTTCTTTTGGATGCCAACTTCAAACCTTTGGTTGGAGAGGTTGAGATCTCAAAACTTCTAGATCCATCAAGAGGAACTGCAAGTATTAGTGCAGTTGCTGGTTCATTTGGCTATATTCCACCAGAATATGCGTACACGATGCAAGTTACGGCCCCGGGAAACGTTTATAGCTACGGTGTGATCTTGCTTGAGATCCTCACTACCAGACTGCCAGTTGATGAGGAATTTGGTGAAGGAGTTGACTTGGTGAAGTGGGTGCATAGTGCTCCCTCGAGGGGCGAAACACCTGAACAGATACTCGATTCTCGACTGAGCACGGTGTCGTTCGGCTGGAGGAAGGAGATGCTTGCAGCTCTGAAGATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCAAAAATGAAGAAGGTGGTGGAAATGCTTCTAGAGATCAAGCAAAATTGA 2673 42.69 MAFLCCYLFILFAGFLSNSQFLGAELDDQITMSSIREELQVPGWSSNISDYCSWKGVHCGLNHSMVETLDLSGHSLRGNLTLIAELKALKWLDLSYNDFHGEIPSIFANLSELEFLDLSANKFDGLIPAQLGGLKNLKSLNLSNNQLVGEIPDELQGLEKLQDFQVSSNRLNGSIPSWIGNLTHLRVFTAYENDFGGVIPDNLGSVSDLRVLNLHTNKLEGPIPRSIFASGKLEILVLTQNRLNGNLPEEIGNCKSLTSIRIGNNELVGVIPPAIGNVSSLAYFEVDNNHLSGDIASQISQCSNLTLLNLASNGFTGTIPPELGELMNLQELILSGNSLYGDIPRSMLECKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLFTGSIPFFVPFQKSANSSFLGNDGLCGAPLSISCKNSIGSYNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSTGTADDATINDQPTIIAGNVFDDNLRQEIDLDSVVKATLKDSNKLIFGTFSTVYKAVMPSGMIISVKRLKSMDKTIIHHQSKMIRELERLGKLNHANLLQLIGYVIYEDVALLLHHYLPNGSLAQLLHESTKQPEYEPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLLEIKQN 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22990893 22994846 + Maker00020283 Lcy1g1936 623848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1936 890 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 231 521 - -
Lcy1g1936 890 Gene3D Phosphorylase Kinase; domain 1 575 687 - -
Lcy1g1936 890 ProSiteProfiles Protein kinase domain profile. 609 890 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1936 890 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Lcy1g1936 890 Pfam Leucine Rich Repeat 232 254 IPR001611 GO:0005515(InterPro)
Lcy1g1936 890 Pfam Leucine Rich Repeat 429 447 IPR001611 GO:0005515(InterPro)
Lcy1g1936 890 Pfam Leucine Rich Repeat 160 182 IPR001611 GO:0005515(InterPro)
Lcy1g1936 890 Pfam Leucine Rich Repeat 304 326 IPR001611 GO:0005515(InterPro)
Lcy1g1936 890 Gene3D Ribonuclease Inhibitor 275 523 IPR032675 -
Lcy1g1936 890 SMART LRR_typ_2 374 398 IPR003591 -
Lcy1g1936 890 SMART LRR_typ_2 326 350 IPR003591 -
Lcy1g1936 890 SMART LRR_typ_2 134 157 IPR003591 -
Lcy1g1936 890 SMART LRR_typ_2 158 182 IPR003591 -
Lcy1g1936 890 SMART LRR_typ_2 447 470 IPR003591 -
Lcy1g1936 890 SMART LRR_typ_2 110 133 IPR003591 -
Lcy1g1936 890 SMART LRR_typ_2 86 109 IPR003591 -
Lcy1g1936 890 SMART LRR_typ_2 206 230 IPR003591 -
Lcy1g1936 890 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515(InterPro)
Lcy1g1936 890 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515(InterPro)
Lcy1g1936 890 Pfam Protein tyrosine and serine/threonine kinase 613 883 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1936 890 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 579 687 - -
Lcy1g1936 890 Gene3D Ribonuclease Inhibitor 27 172 IPR032675 -
Lcy1g1936 890 Gene3D Ribonuclease Inhibitor 173 274 IPR032675 -
Lcy1g1936 890 PRINTS Leucine-rich repeat signature 113 126 - -
Lcy1g1936 890 PRINTS Leucine-rich repeat signature 134 147 - -
Lcy1g1936 890 Gene3D Transferase(Phosphotransferase) domain 1 688 890 - -
Lcy1g1936 890 CDD STKc_IRAK 618 887 - -
Lcy1g1936 890 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 688 890 - -
Lcy1g1936 890 PANTHER RECEPTOR-LIKE PROTEIN 55 232 884 - -
Lcy1g1936 890 ProSiteProfiles Leucine-rich repeat profile. 136 159 IPR001611 GO:0005515(InterPro)
Lcy1g1936 890 SUPERFAMILY L domain-like 28 344 - -
Lcy1g1936 890 SUPERFAMILY Protein kinase-like (PK-like) 610 885 IPR011009 -
Lcy1g1936 890 SUPERFAMILY L domain-like 288 514 - -
Lcy1g1936 890 ProSitePatterns Tyrosine protein kinases specific active-site signature. 732 744 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1936 890 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 60 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1936 Lcy-Chr1:22990893 Lcy6g0288 Lcy-Chr6:2663187 1.17E-60 dispersed
Lcy1g1936 Lcy-Chr1:22990893 Lcy1g2551 Lcy-Chr1:46483928 1.31E-41 wgd
Lcy1g1936 Lcy-Chr1:22990893 Lcy9g0772 Lcy-Chr9:26121564 4.95E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65684 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1936 - - - 0.0